| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2226 |
|---|
| Symbol | potD |
|---|
| ID | 4201049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 2473475 |
|---|
| End bp | 2474557 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638083091 |
|---|
| Product | spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein |
|---|
| Protein accession | YP_696650 |
|---|
| Protein GI | 110799081 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA AAAAATTTTT AGCATTAACT TGTTCAACAC TTCTTTTATC ATCTCTTTTT
CTTGGTTGTG GACCAAAAAA GGATGAGGAA GCTACTCAAG ATAAAAACAA TAACGTTCTT
TATGTTTATA ACTGGGGAGA TTACATAGAT CCAGAACTAC TTACTAAATT TAAAGAAGAA
ACTGGAATAG ATGTTAAATA CGATGTTTAT GATACTAATG AAATAATGTA TCAAAAACTT
AATAGTGGTA ATGTATCTTA TGATATAGTA ATTCCTTCTG ATTACATGAT AGAAAAAATG
AAAGAAGAAG ATATGTTAGC TAAGATAGAT TATTCTAATA TTCCTAATTA TAAATATATA
GGAGAACAAT TTAAAAATTT AGCTTATGAT CCAACTAATG AATACTCAGT ACCATATATG
TGGGGAACAG TTGGAATAAT ATATAATACA AAGAGAGTTA GTGATCCTGT AGATAGTTGG
AATATCCTTT GGAATCCTAA ATATAAGGAT CAAGTTATAA TGCCAGATAG TGTTAGAGAT
GCTATGGCTG TTGCAGAAAA AAAATTAGGA TATTCATTAA ATACAGAAAA CCTAGACCAA
ATAGAAGCTG CTAAAAAGGA GCTTATGACT CAAAAGAAAG ATGGATTAAT CTTAGCTTAC
ATGGTTGACC AAGTTAAAGA TGCCATGGTT GGTGGAGAGG CTTCCCTTGC TGTTGCTTGG
TCTGGAGATG CTGTAACAAT GATAGAGAGA AATCCTGATT TAGCTTATGC TATTCCTAAG
GAAGGATCAA ATAAATGGTT TGATGCCATA GCAATTCCTA AAAATGCAAA GCATAAAGAA
AATGCTGAGA AGTTTATAAA CTTCCTTTGC GATCCTGAAA ATGCTGAGCA AAATGTAGAA
TATATAGGAT ACTCTACTCC AAACACAGCT GCATATGACC TTTTACCTGA GGATATAAGA
GATGATAAAG TTGCATACCC AGATGAAGAG TCATTAAAAA ATTGTGAGGT ATTTATAGAT
TTACCTTCTA AAATACTTAG AAAATATGAT GAAGCTTGGT TAGAAATCAA GTGTGTTTAT
TAA
|
|---|
| Protein sequence | MKLKKFLALT CSTLLLSSLF LGCGPKKDEE ATQDKNNNVL YVYNWGDYID PELLTKFKEE
TGIDVKYDVY DTNEIMYQKL NSGNVSYDIV IPSDYMIEKM KEEDMLAKID YSNIPNYKYI
GEQFKNLAYD PTNEYSVPYM WGTVGIIYNT KRVSDPVDSW NILWNPKYKD QVIMPDSVRD
AMAVAEKKLG YSLNTENLDQ IEAAKKELMT QKKDGLILAY MVDQVKDAMV GGEASLAVAW
SGDAVTMIER NPDLAYAIPK EGSNKWFDAI AIPKNAKHKE NAEKFINFLC DPENAEQNVE
YIGYSTPNTA AYDLLPEDIR DDKVAYPDEE SLKNCEVFID LPSKILRKYD EAWLEIKCVY
|
|---|
| |