| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1890 |
|---|
| Symbol | |
|---|
| ID | 4201875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2125752 |
|---|
| End bp | 2127527 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638082759 |
|---|
| Product | V-type ATP synthase subunit A |
|---|
| Protein accession | YP_696323 |
|---|
| Protein GI | 110798759 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1155] Archaeal/vacuolar-type H+-ATPase subunit A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAACGG GGAAAATTAT CAAGGTTTCA GGTCCTTTAG TAGTTGCTGA AGGTATGGAT
GAAGCTAATG TATATGACGT TGTAAAAGTT GGAGAAAAGG GTCTTATCGG AGAGATCATT
GAAATGAGAG GAGATAAGGC TTCAATCCAG GTATATGAAG AAACATCAGG TATTGGACCT
GGGGACCCAG TTATAACTAC TGGAGAACCA CTTTCAGTAG AATTAGGACC AGGACTTATA
GAGTCAATGT TCGATGGAAT ACAAAGACCT CTAGACGCTT TCATGAAAGC AGCTAATTCT
GCTTTCTTAA GTAAAGGGGT AGAAGTTAAA TCTTTAAATA GAGAGAAAAA ATGGCCTTTT
GTGCCAACTG CTAAGGTTGG AGATAAGGTT TCAGCTGGAG ACGTAATAGG AACAGTTCAA
GAGACTGCCG TTGTTCTTCA TAGAATAATG GTTCCTTTCG GCGTTGAAGG TACAATAAAA
GAAATCAAAG CTGGAGATTT CAATGTAGAA GAAGTTATCG CTGTAGTAGA AACTGAAAAA
GGTGATAAGA ATTTAACATT AATGCAAAAA TGGCCTGTAA GAAAAGGTAG ACCATATGCA
AGAAAATTAA ATCCAGTTGA GCCAATGACT ACAGGACAAA GAGTTATAGA TACTTTCTTC
CCAGTAGCTA AAGGTGGAGC TGCTGCCGTT CCAGGACCTT TCGGAGCTGG TAAAACAGTA
GTTCAGCACC AAGTTGCTAA ATGGGGAGAT ACTGAGATAG TTGTTTACGT TGGATGTGGA
GAACGTGGTA ACGAGATGAC AGACGTTCTT AACGAATTCC CAGAACTTAA AGACCCTAAA
ACTGGGGAAA GCTTAATGAA GAGAACAGTT CTTATTGCTA ATACATCTAA CATGCCAGTT
GCTGCCAGAG AAGCATCAAT ATATACTGGT ATAACAATAG CAGAGTATTT CAGAGATATG
GGATACTCAG TATCAATCAT GGCTGACTCA ACTTCACGTT GGGCAGAGGC TTTAAGAGAA
ATGTCAGGAA GACTTGAAGA AATGCCAGGA GACGAAGGTT ACCCAGCATA CTTAGGATCA
AGACTTGCTG ATTACTATGA AAGAGCTGGT AAAGTTGTAG CTTTAGGTAA AGATGGAAGA
GAAGGAGCTG TTACAGCTAT CGGAGCAGTA TCCCCTCCAG GAGGAGATAT ATCTGAGCCA
GTTACACAAT CAACTTTAAG AATAGTTAAA GTTTTCTGGG GACTAGATGC TCAATTAGCA
TATAAGAGAC ACTTCCCATC AATTAACTGG TTAACATCAT ACTCATTATA CTTAGAAAAA
ATGGGTGAAT GGATGGATGC TCACGTAGCA GACGATTGGT CAGCATTAAG AACAGAAGCT
ATGGCACTTC TTCAAGAAGA AGCAAACTTA GAAGAAATAG TAAGACTTGT TGGTATGGAT
GCACTTTCAG AAGGTGATAG ATTAAAACTT GAAGTTGCTA AGTCAATAAG AGAAGACTAT
TTACAACAAA ACGCATTCCA TGAGAATGAC ACATATACTT CATTAAATAA ACAGTACAAA
ATGTTAAACT TAATCTTAAG TTTCAAACAT GAGGCTGAAA AAGCTTTAGA AGCTGGAGTT
TATTTAGATA AAGTATTAAA ACTTCCTGTT AGAGATAGAA TTGCAAGAAG TAAATATATT
TCAGAAGAAG AAATAAGTAA GATGGATGAC ATCTTAGTTG AATTAAAATC AGAGATGAAC
AAGTTAATCA GCGAGGGAGG TGTTCTAAAT GCTTAA
|
|---|
| Protein sequence | MKTGKIIKVS GPLVVAEGMD EANVYDVVKV GEKGLIGEII EMRGDKASIQ VYEETSGIGP
GDPVITTGEP LSVELGPGLI ESMFDGIQRP LDAFMKAANS AFLSKGVEVK SLNREKKWPF
VPTAKVGDKV SAGDVIGTVQ ETAVVLHRIM VPFGVEGTIK EIKAGDFNVE EVIAVVETEK
GDKNLTLMQK WPVRKGRPYA RKLNPVEPMT TGQRVIDTFF PVAKGGAAAV PGPFGAGKTV
VQHQVAKWGD TEIVVYVGCG ERGNEMTDVL NEFPELKDPK TGESLMKRTV LIANTSNMPV
AAREASIYTG ITIAEYFRDM GYSVSIMADS TSRWAEALRE MSGRLEEMPG DEGYPAYLGS
RLADYYERAG KVVALGKDGR EGAVTAIGAV SPPGGDISEP VTQSTLRIVK VFWGLDAQLA
YKRHFPSINW LTSYSLYLEK MGEWMDAHVA DDWSALRTEA MALLQEEANL EEIVRLVGMD
ALSEGDRLKL EVAKSIREDY LQQNAFHEND TYTSLNKQYK MLNLILSFKH EAEKALEAGV
YLDKVLKLPV RDRIARSKYI SEEEISKMDD ILVELKSEMN KLISEGGVLN A
|
|---|
| |