| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1813 |
|---|
| Symbol | |
|---|
| ID | 4200998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2046783 |
|---|
| End bp | 2047427 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 24% |
|---|
| IMG OID | 638082683 |
|---|
| Product | putative accessory gene regulator protein B |
|---|
| Protein accession | YP_696247 |
|---|
| Protein GI | 110798934 |
|---|
| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4512] Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0195657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAGA ATATATCGAA GTTAATAGCT GAAAAAGTTT CTAGTGAATT AAATTATGAT
AATGAAAGAA AAGAAATTAT TCAGTATGGA ACTTATGCTC TAATACAAAC ATTAATATCA
ATAATTTCAG TACTTATACT GGGATTAGTG TTTAATATAG CTTTAGAAGC TTTGATATTT
TTATTTACAG CAAGCATACT TAGAAAATAC TCTGGAGGAG CACATTCAGA ATCCTCTAAT
GTATGTACTT TATTAGGCAT AATAATTTCA ATATGTATTG GTTTTTTAAT AAAAAGTAGT
TTTTTTGCAA AAATGAACTT TGAGCTTGTA GTGTTTATTG GAATAGTTAT TTTTGTTTTT
GGATATTTTA TAGTTTTTAA ATTTGCTCCA GTAGATACTA AAAATAAACC AATAAAAACC
GAAAAGAAGA AAAAACGCAT GAAAAAAGGA TCTTTAAAGA TTTTAACTAT ATATTTATTT
ATTGAAGTAT TAAGTATAAT TTTATATTAT AATTCAGGAT GGAGTTTAGC TAAGCCTGTT
ATGTTAAGTA TAATCTTTGG AGTAGCATGG CAATGTATGA CTCTAACCTA CATAGGAAAT
ATATTGTTAA AAACTATAGA TTCTTTTACA AATAAATTAT TATAA
|
|---|
| Protein sequence | MIENISKLIA EKVSSELNYD NERKEIIQYG TYALIQTLIS IISVLILGLV FNIALEALIF
LFTASILRKY SGGAHSESSN VCTLLGIIIS ICIGFLIKSS FFAKMNFELV VFIGIVIFVF
GYFIVFKFAP VDTKNKPIKT EKKKKRMKKG SLKILTIYLF IEVLSIILYY NSGWSLAKPV
MLSIIFGVAW QCMTLTYIGN ILLKTIDSFT NKLL
|
|---|
| |