| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1653 |
|---|
| Symbol | |
|---|
| ID | 4202769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 1868529 |
|---|
| End bp | 1869803 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638082530 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_696094 |
|---|
| Protein GI | 110800245 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4640] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00215239 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAT TGAGAGAGAG TATTACAGGG GTAGGTCATA ACATTTATAG CTTTTATAAA
AGAGTAAAGG ATAAAATTAT AAAAGAAAAG GATCCTAAGG TAATAATAAT TTGTGTTATT
GCTTTAGCCT TAATTATAGT ATTTCTATAT GGTAATGTTA GTAGTAAAAA GAGAGATGTA
ATTGAACAAT TATCTAATTC CTTAAGCAAA GGAAATGAAA GAGCTTTAAT GAACTTAATA
GAAGATGGAA ATAAAAATTC TGGAATAACA AAAGAGGAGT TAATACCATA TATTGATTTT
TTTAAAGCGG ATAAAAGTAG AATTAATAAG TTAGTTTCTT CTTTAGAAAA TGGGGATGAG
ATATACTCTA CAAAATTGGA GTCTAAAAAA AGTTTTTGGG GAGAAAAATG GTATGTTGTA
ATACAAAAAA AGAAACTTAT TGTGGCATCT AATTTCCCGG AAGCTAGTGT GTATTTAAAT
GGTAATTTTA TAGGTACAAC TAATACTAGT AGAACTTTAG AAATACCTAA CTTAATACCA
GGAGTCTATG ATCTTAAGAT TGAAAAGAAA GCATATAATT CTAATTTAGT AGAAGAAAAA
AATATTGTTT TCATGGATAA TAATAAGATA GACATACCTT TAAATGGAAC CTTAGTCACA
GTTAAGAGTA GTTTTGATGA TAGTAATGTA TATATAAATG GAGAGGACTC GGGTATAAAG
GTAAAAGATT TTAAGGATGT TGGTCCTTTC CCAAAGGATG GTTCAACTTA CTTAACTATA
AAATGCAACA CTCCTTGGGG AGAGATAGAT AGCCAAAAGT TTTATATAGA AGATCATCCA
GAAATAAATA TAGAATTAGA TTTAAAAGAT ACAATCATAA AAGAAGATGT TGAAAAAGTT
GTAAAGGAAT TTTATAGTAG CGTATTTCAG GCTTTAAATT CAGAGGATAA AAATGATATA
AGAAATGCTA AGGATGAAGT TAAGGATAAT ATATATAATA CATTAAGTCA AAAATATTTT
CTTTTAAAGA ATGACTATGA TATAAGCGAT CTTAAAATTA AGATGGAAAA TAGTTCAATA
GAACGAAATC ATGGTGTTTA TGAAGCTAGT ATTGTAGTTA ATGTTTCTTA TAAGATAAAA
AAGAAAATAT TAGGAATAGA TGTTAAAAGT GAATCAATGG AAAAAAACTT TTTCACAAAT
ATGAAGTATG AAAATGGAAA ATGGATAGTT TATAATGTAC AAGACTTTTC ATTACCAGGA
TTAGAAGAAG AGTAA
|
|---|
| Protein sequence | MDKLRESITG VGHNIYSFYK RVKDKIIKEK DPKVIIICVI ALALIIVFLY GNVSSKKRDV
IEQLSNSLSK GNERALMNLI EDGNKNSGIT KEELIPYIDF FKADKSRINK LVSSLENGDE
IYSTKLESKK SFWGEKWYVV IQKKKLIVAS NFPEASVYLN GNFIGTTNTS RTLEIPNLIP
GVYDLKIEKK AYNSNLVEEK NIVFMDNNKI DIPLNGTLVT VKSSFDDSNV YINGEDSGIK
VKDFKDVGPF PKDGSTYLTI KCNTPWGEID SQKFYIEDHP EINIELDLKD TIIKEDVEKV
VKEFYSSVFQ ALNSEDKNDI RNAKDEVKDN IYNTLSQKYF LLKNDYDISD LKIKMENSSI
ERNHGVYEAS IVVNVSYKIK KKILGIDVKS ESMEKNFFTN MKYENGKWIV YNVQDFSLPG
LEEE
|
|---|
| |