Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1513 |
Symbol | rpoN |
ID | 4202800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1729103 |
End bp | 1730488 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 638082391 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_695956 |
Protein GI | 110800895 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATGG ATTTTAATTT GAATTTAACC CAAGAGCAAA AGCTTATTAT GACCCAGCAA ATGCAACTTT CAATAAAACT TTTGCAAATG TCAACATATG ATTTAAGAGA ATATATTGAA AAAGAATTTT CAGAAAATCC TGTATTAGAA GCTCAGTATG AGGATATTAA AGAGGTATCA AAAGAGCAAG ATAGATTAGA ATATAAAGAG TTAGTAAAAT ATTTAGAGTC AGATAACTAT GGTTCTCAAA GTTATGGTGA ATATGATGAG GAAGGAATAT CACCTTTTAC TTTCATAAGT AAGCCAGAAT CTTTAACAGA TTATTTAGAA GGTCAAATAT TAGAACTACC CATAGACGAA TATATGAGAA GTGTATGTAG TTATATGGTC GAGTGTTTAG ATCAAAAGGG ATATTTAGAT ATAAAAAAAG AAGAATTAAT GAATGAGCTA GAGTGTTCTG AAGAGACTTT TAATAGGGCT TTAATAGTTA TTCAAAACTT AGAACCTGCT GGTATAGGGG CAAGAGATTT AAAGGAATGC TTAGAAATTC AGTTAGAAAG AAAAGGTGAA AATGACCCTA TAGTTAAAGA GATTATAGAT AATCATTTAG ACGATTTAGC AGATAATAGA TATCAAGTTA TTGCAAAGGA TTTAGACATT ACTCCTAAAA AAGCACAAGA TTATGGAGAT TTAATAAAAA CTTTAGAACC AAAACCATCA AGAGGCTTTT ACACTGGTGA TGAGGTGGGA TTTATAATTC CTGATGCGGA AATAAGAAAG ATAGATGGAG AATTCCTTAT ATTAATGAAG GATGGAGTTT TACCTATGCT TTCAGTTAAC CCTTTATATA AAGATATATT AAAAGATAGT ACTAATGATA AAGAGGCTAC AGAGTATGTA AAGGAAAAAA TAGATAAAGC TATGTTTTTA ATTAAAAGTA TAGAACAAAG AAAAAGCACT CTACACAAAG TTCTCCAAAA AATACTTGAA AAGCAAAAGG ATTATTTTGA GAAGGGTGAA AAATATTTAA AACCTATGAC TTTAAAAGAA ATAGCTGAGA AGCTAGAAAT GCATGAATCA ACTATTTCAA GAGCCATAAG AGATAAGTAT ATTTTAACTT CCATGGGAAC AATAAAGATA AAGGATCTTT TTGTAAACTC AATAAGTAAT AAGGAAAAGA GTCATGGAGA AGAAGATGTT ACAGTTATAA ATATAAAAAA GGCTTTAGAA GAAGTAATTA AGGAAGAGGA TAAAAGGAAG CCCTTATCAG ATCAAGCCAT AAGCGAAATT TTAAAAGAAA AAGGAATGGC TATTTCAAGA AGAACTGTGG CAAAATACAG AGAAGAGTTA GGCATAAAGT CATCTAGCAA GAGAAAAAGA TTTTAA
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Protein sequence | MLMDFNLNLT QEQKLIMTQQ MQLSIKLLQM STYDLREYIE KEFSENPVLE AQYEDIKEVS KEQDRLEYKE LVKYLESDNY GSQSYGEYDE EGISPFTFIS KPESLTDYLE GQILELPIDE YMRSVCSYMV ECLDQKGYLD IKKEELMNEL ECSEETFNRA LIVIQNLEPA GIGARDLKEC LEIQLERKGE NDPIVKEIID NHLDDLADNR YQVIAKDLDI TPKKAQDYGD LIKTLEPKPS RGFYTGDEVG FIIPDAEIRK IDGEFLILMK DGVLPMLSVN PLYKDILKDS TNDKEATEYV KEKIDKAMFL IKSIEQRKST LHKVLQKILE KQKDYFEKGE KYLKPMTLKE IAEKLEMHES TISRAIRDKY ILTSMGTIKI KDLFVNSISN KEKSHGEEDV TVINIKKALE EVIKEEDKRK PLSDQAISEI LKEKGMAISR RTVAKYREEL GIKSSSKRKR F
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