Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1483 |
Symbol | |
ID | 4202266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1681600 |
End bp | 1682970 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 638082361 |
Product | MATE efflux family protein |
Protein accession | YP_695926 |
Protein GI | 261876166 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.820235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATC AATATGAACT AAAGAATGAA AAAATTGGAA GGTTGCTTTT AAAATATTCA CTACCAGCTA TACTATCTAT GATGGTAACT TCCTTATATA ACACTGTAGA TAGAGCTTTT ATAGGTTCTA TTAAGGATAT AGGAGCCTTT GCCATATCTG GCTTAGGAGT AACTATGCCC TTGTTTACAA TATTAGGTGC TTTCTGCGTT GCCATTTCTG TAGGAGGAAG CACTAATATA TCAATAAAGC TAGGGGAAGA AAAGAAGGAA GAAGCTGAAA GAATATTAGG AAATACTTTT ATATTATCCA TAGTTGTTGC TTTAATCATT ATGATCTTTG GATTCTCATT TTTAGAAAAA ATACTATACT TTTTTGGTGC AAGTAAGGAA ACTATTATAT ATGCAAAGGA TTATATGAGG GTAATACTTA TAGGGGCATG GTTTAACTTT CCTGGATTTG CTCTTAATAA TGCAATAAGA GCTGAGGGAA ATCCAAAGTT AGCTGGTAAA ATCATGATAA TAAGTTGTGT TTTAAACATA ATTTTAGATC CAATATTTAT ATTCTTATTT CATATGGGAA TTAAGGGAGC TGCCTTAGGA ACTATAATTT GTCAATTCAT AGTTTTTCTT TGGACAATGT ATTATTTTAC CTTAGGAAAG TCAAACTTAA AGCTAAGGAT TAAAGGAAAG ATATTAAATA AGAATATTTT AAGGGCAATA ATTTTAATTG CTTTAACTCC ATTTTTTATG GAGCTTGCAG CAGGATTTAT ACATTTAATA ACAAATAGAG TTCTTAAGGA TTATGGTGGA GATTTAGCCA TAGGAGCAAT GACTTCAATA ACATCTATAT ACCTTTTATT TTTAATGCCA GTCTTTGGCT TAAGTCAAGG AATGCAAACC ATAGTTGCAT ATAACTATGG AGCAAAGGAG TATAAACGTG CTAAAAAAAC TCTATTAATG ACTATAATAA TTGCAACTTT AATTTTAACC TTAGGACTTG TACTTATTAG AATTTATCCA AGAGAGTTTA TCAATATATT TACAAAGGAT AAGGAGCTAA TAAATATAGC ACTTAATGGA TTAAAAATAT ATACTCTTGC CTTACCTACC TTAGGGGTTT CAATCTTAGG GGCAGTATAT TTTCAGTCCA TAGGAAATGT TAAAAAGTCA ATTTTTCTAA GTTTATTAAG ACAAGTTATA CTATTTATAC CTATTATATT TATAATACCT AGAGTATATG GACTAAATGG AGTGTGGATT TCACAGCCCT TAGCTGATAT TTTAGCTACC GTATTAATAC TTATATTTTT AATAAAAGAA TTTTACATAA GAGATACTCA TGATTTAATT TGCAGAGCAG AAAGAACATA G
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Protein sequence | MKNQYELKNE KIGRLLLKYS LPAILSMMVT SLYNTVDRAF IGSIKDIGAF AISGLGVTMP LFTILGAFCV AISVGGSTNI SIKLGEEKKE EAERILGNTF ILSIVVALII MIFGFSFLEK ILYFFGASKE TIIYAKDYMR VILIGAWFNF PGFALNNAIR AEGNPKLAGK IMIISCVLNI ILDPIFIFLF HMGIKGAALG TIICQFIVFL WTMYYFTLGK SNLKLRIKGK ILNKNILRAI ILIALTPFFM ELAAGFIHLI TNRVLKDYGG DLAIGAMTSI TSIYLLFLMP VFGLSQGMQT IVAYNYGAKE YKRAKKTLLM TIIIATLILT LGLVLIRIYP REFINIFTKD KELINIALNG LKIYTLALPT LGVSILGAVY FQSIGNVKKS IFLSLLRQVI LFIPIIFIIP RVYGLNGVWI SQPLADILAT VLILIFLIKE FYIRDTHDLI CRAERT
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