Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1238 |
Symbol | |
ID | 4201260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1408498 |
End bp | 1410330 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 638082119 |
Product | glycosy hydrolase family protein |
Protein accession | YP_695684 |
Protein GI | 110799990 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.247532 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATTTAA TACCAAGACC AAAAAGTGTA ATTAATCATG AAGGTGAATT TTTTATAGAA AGAGATACTG AAATTATATT AAGTAGTGAA TTATCCTTTG AAGATTTAAA TTTGGCAATT ATGATTCAAA AGGAAATAGA AAAAGTATTA GATTTTAAAC TTAACATAAA TAAACTTTTT ATGGATAAGA AATATAGTAA CTCAATAATT TTAAGAGAAT TTAAATTTGA AAATGAAGAG GAATATAAAA TAGAAATAAA GGAGAATCAG GTAATAATAG AAGGGTTTGG TGCTGGATTA TTCTATGGAT GTCAGAGCTT TAGACAGCTT GTAAGAGAGT TTGGAGCATG TATTCCAAAT CTAACAATAG AAGATTCTCC ATATTTTAAA TATCGTGGAT TTTATCATGA TGTAACAAGG GGAATGGTAC CAACCTTAGA TACATTAAAA AGATTAGTTG ATAAGGCAGC TTTTTATAAA ATAAATCAGT TGCAACTATA TATAGAGCAT ACCTTTGCTT TTAAGGGAAT GAGTGAAGTT TGGATGGATA AGGATCCTTT AACAGCGGAG GAAATATTGA TTTTAGACAA GTATTGCAAA GAGAGACATG TGGAACTTGT ACCATCATTA TCAACTTTTG GTCATCTATA TGAAGCTTTA AGAAGTAAAT CCTTTAGAGA ACTTTGTGAA TTAGAAATAG GAGATGAAGA ATATTCTTTT GTAGATAGAA TGGCACATCA TACTTTAGAT GTTACTAATC CTAAAAGTTT AGACTTTGTT GAATCAATGC TTTTAGAATT TATTCCTTTA TTCAGTTCAG ATAAGTTTAA TATTTGCTGT GATGAAACCT TTGATTTAGG AAAAGGAAAG AGTAGAGAGA AGGCTGAAAA ATTAGGAGTA GGTAAAATAT ATACAGAGTT TTTAAATAAG GTATACAACA TTGTAAAAAG GTTCAATAAA AATGTTATGT TCTGGGGAGA TATAATAGTT GGATATCCAG AGCTTTTAAG TGATATACCA GAGGATTTAA CTTGTTTAAC TTGGAACTAT CATCCACAGG CTAATGATGT AGCCACAAAA ATTATAGCAG AGAACAATAA AGTACAATAT GTTTGCCCTG GTGTAGGTGG ATGGAATATG ATGATGAATC TTATAGAAGG CTCTTTTAGT AATATAAGAA GAATGGTTAA CCATGGAATG AAATATGGAG CTATAGGTGT TTTAAATACA AACTGGGGAG ACTATGGAAA TATAAATCTA TTAGCTAATT CAATGCCATC TATGATTTAT GGAGCAGGAA TTTCATGGAA TCCAAAGGAA GAGGAGTTTA ATGAAATTTT TAAGTCTATA TCCCTTATGG AATTTGGTGA TGAATCTATG AAGGTGGTTT CTTTAATGGA TAAGCTTTCT AAAAATCAAG TTGCAGGTTG GGGAGAACTT GTTAGATGGA AAGAAAAGTT TAATGAAAGA GAAGAAACTA AGGAAGAAAT TAAGAATATA GATACTTTAA AAGTTTTTGA AGGATATAAG GTTGCTTCAG AGGTAAGAAG AGAGTTTATT AAATTACTTA AAAATACAGA GGATAAAGAA GCTATTCAAA GCTTTATTGT GTCTTCAAAG GGATGGGAGC TTATAGATAA ATTCTTCATG GTATTACTTG AAAGAGAGTT TAATAAAAAA AGTTTATTAG ATATAGATAA AAAAGACTTA GCTAAGGATT TAGAGCTTTG GTTTTATGAT TACACATCAA TATGGAGAAA ATATAATAAA GAAAGCGAGC TTAATAGAAT AAGAGAAGTT ATAGTATATA TGTGCTCATA TTTAAGGGGT TAA
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Protein sequence | MHLIPRPKSV INHEGEFFIE RDTEIILSSE LSFEDLNLAI MIQKEIEKVL DFKLNINKLF MDKKYSNSII LREFKFENEE EYKIEIKENQ VIIEGFGAGL FYGCQSFRQL VREFGACIPN LTIEDSPYFK YRGFYHDVTR GMVPTLDTLK RLVDKAAFYK INQLQLYIEH TFAFKGMSEV WMDKDPLTAE EILILDKYCK ERHVELVPSL STFGHLYEAL RSKSFRELCE LEIGDEEYSF VDRMAHHTLD VTNPKSLDFV ESMLLEFIPL FSSDKFNICC DETFDLGKGK SREKAEKLGV GKIYTEFLNK VYNIVKRFNK NVMFWGDIIV GYPELLSDIP EDLTCLTWNY HPQANDVATK IIAENNKVQY VCPGVGGWNM MMNLIEGSFS NIRRMVNHGM KYGAIGVLNT NWGDYGNINL LANSMPSMIY GAGISWNPKE EEFNEIFKSI SLMEFGDESM KVVSLMDKLS KNQVAGWGEL VRWKEKFNER EETKEEIKNI DTLKVFEGYK VASEVRREFI KLLKNTEDKE AIQSFIVSSK GWELIDKFFM VLLEREFNKK SLLDIDKKDL AKDLELWFYD YTSIWRKYNK ESELNRIREV IVYMCSYLRG
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