| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0542 |
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| Symbol | treC |
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| ID | 4202044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 645087 |
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| End bp | 646754 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 638081424 |
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| Product | alpha,alpha-phosphotrehalase |
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| Protein accession | YP_694996 |
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| Protein GI | 261876150 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02403] alpha,alpha-phosphotrehalase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.764323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATT TTAAGAAAAG TGTTGTTTAT CAGATATATC CAAAATCATT TAAGGATTCA
AATGGAGATG GTCTTGGAGA TTTAAGAGGA GTAATTGAAA AATTAGATTA TCTTAAAAAT
TTAGGAGTAG ATTATATTTG GATGACTCCA TTTTATGTAT CTCCTCAAAA AGATAATGGA
TATGATATAG CAGATTATTA TAAAATTGAT CCTAGATATG GAACTATGGA AGATTTTGAA
GAATTGGTTA AAGAAGCTAA AGGCAGAAAT ATAGATATTA TGCTTGATAT GGTTTTTAAT
CATACTTCTA CAGAGCATGA ATGGTTTAAA AGAGCTTTAA AGGGCGAAGA AAAATATAAA
AATTATTACA TTTTTAAAGA AGGAAAAAAA GGAGAACCAC CAACAAATTG GATTTCAAAG
TTTGGAGGGA ATGCTTGGGA GTATGTTGAG GAGCTAGGAG AGTATTACCT ACATTTATTT
GATGTTTCAC AGGCTGATTT AAACTGGGAT AATAAAGAAT TAAGAGAAGA AATCTATAAA
GTGGTGAATT TCTGGATAGA TAAAGGGGTT AAAGGATTTA GATTAGATGT TATAAACCTT
ATTTCTAAGC CAGAAAAATT TGAAAATGAT TATGAAGGAG ATGGAAGAAG ATTTTATACT
GATGGGCATA GAATACATGA GTATTTAAAA GAACTTAATG AAAGAACTTT TGGTAAAGAT
GTAGAAATAG TAACTGTTGG TGAAATGTCA TCAACAACTA TAGAAAACTG TATAAAATAT
TCTAATCCTA AGGAAAAAGA ATTATCAATG GTATTTAATT TTCATCATTT AAAGGTTGAT
TATAAAGATG GTCAAAAATG GTCTTTAATG GATTTTGATT TTATTGAATT AAAAAAACTT
TTTAATAATT GGCAAAGAGG AATGATTAAT GGAGGAGGCT GGAATGCTGT TTTTTGGTGT
AACCACGATC AACCAAGAGT TAATTCAAGA TTTGGAGATG TAAAGAAATA CTTTAATGAA
TCTTCAAAAA TGCTAGCGAC TTCAATTCAT ATGATGAGTG GAACTCCTTA TGTATATCAA
GGAGAAGAAA TTGGAATGAC AAATCCAGGT TTTGAAAGTA TTGAAGAATA TAGAGATGTA
GAATCAATAA ACTATTTCAA TATTTTAAAA GAAGAGGAAA TTGATGAAAA AGAAATAATG
GAAATCCTTA AGAGCAAATC AAGAGATAAC TCAAGAACTC CTGTTCAATG GAATGAAGAA
AAAAATGCTG GGTTTACTAC AGGAACTCCT TGGATAAATA TTGCTAATAA TTATAGAGAA
ATAAATGTTG AAAGAGCTTT AGAAAATAAG GATTCTGTAT TTTATCATTA TAAGAAACTT
ATTGAATTAA GAAAGAATGA AGATGTAATA GCCTATGGAG ATTACATTCA GTTTTTAGAA
GATCATCCTA AAGTTTATGC TTATGAAAGA AATTATAATG GTGAAAAGTT ACTTGTTATA
AATAACTTCT ATGGAGAAGA GTGCTTAGTA GATTTATCAA AGGAAATTGA AGGGCTAGAA
AATTACAATA AGAGTATTTT AATATCTAAT TATAAGGATA GTACATTAGA TTTATTAAGT
TTAAAGTTAA GACCATATGA ATCAATAGTT TATAAATTAG AAAAGTAA
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| Protein sequence | MKDFKKSVVY QIYPKSFKDS NGDGLGDLRG VIEKLDYLKN LGVDYIWMTP FYVSPQKDNG
YDIADYYKID PRYGTMEDFE ELVKEAKGRN IDIMLDMVFN HTSTEHEWFK RALKGEEKYK
NYYIFKEGKK GEPPTNWISK FGGNAWEYVE ELGEYYLHLF DVSQADLNWD NKELREEIYK
VVNFWIDKGV KGFRLDVINL ISKPEKFEND YEGDGRRFYT DGHRIHEYLK ELNERTFGKD
VEIVTVGEMS STTIENCIKY SNPKEKELSM VFNFHHLKVD YKDGQKWSLM DFDFIELKKL
FNNWQRGMIN GGGWNAVFWC NHDQPRVNSR FGDVKKYFNE SSKMLATSIH MMSGTPYVYQ
GEEIGMTNPG FESIEEYRDV ESINYFNILK EEEIDEKEIM EILKSKSRDN SRTPVQWNEE
KNAGFTTGTP WINIANNYRE INVERALENK DSVFYHYKKL IELRKNEDVI AYGDYIQFLE
DHPKVYAYER NYNGEKLLVI NNFYGEECLV DLSKEIEGLE NYNKSILISN YKDSTLDLLS
LKLRPYESIV YKLEK
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