| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0146 |
|---|
| Symbol | |
|---|
| ID | 4202920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 171485 |
|---|
| End bp | 173662 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638081027 |
|---|
| Product | cell wall surface anchor family protein |
|---|
| Protein accession | YP_694610 |
|---|
| Protein GI | 110799180 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4932] Predicted outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATA GTAAAAATTT CAATATATTT ACCTTATGGT CAGTTGTTAT TTCTATGATA
GTAATTATGA TCTTCCCTGG AAGCATTGTT TTAGGAGAAG AATCAAAATC AGTTCAAAAT
GATGGGGCTG TTGAAATTAC AAGCACTACT TTTGAGAGTA ATACTGTGGC TAAAGACATA
AGCAATAATT TAAGAATTGA CTATAAGATT TTGAATAAAG ATAAGCTTAA AGATGGTGAT
AAAATTGTTA TCAGTTTGCC AGATATATTT AAAGACATAG AGCCTAAATG TCCTGATCAG
CATTTTAAGG ATTTTGATGT TAAGGATGGA GTGGTAACTT TAACCTTTAA TGAAAATGTA
GAAAAAGCTG TAACAGGATA TATGATTATA AGATTTGTGG GAAATAGCAA TATTAGAAAG
GGAGTAAGTT ACCCAATTAG TATTGATTTA AATGGAAAGC CAAGCACTGT TTATATAACA
GGAGAAGAAT ATTCCCATCC TAGTTCTGGT GGACAATACC CTCTTATGTA TAAGACTGCT
GATTTACCAA CAGCTGCTAC AGATAAGGAG CAAGGAAGAG AGTATTATGG AGAGATAGTA
GACAGGAATA AACCTATAAA ATATTTTGTG GAAATAAATT TAGGTGATGG AGTAAATCCA
AATACAAGAA GTTATTTAAG TAATGCTGAT TTTTTTGATA ATATTCCAAA GGGCATGGCT
TTAGATGTAA ATAGTATATG CATAAAAAGA ATGGGTTACT ATGATGAAAG AAGTAGTGAT
GTTACCAAGG ACTTTTGGGA GAGTAATAGA ATAAAGGCTG ATACCAAACA TTTAGAAATA
AATTTTGGTG ACATAAGATA TGAGAGATAT ACAGTTATTT ATGAAACTCG TATTACTTCT
ACTGAAAGTG GATATTTAAA TGATGCTAAA TTATATTATG ATGATGATAA AGAGTTGCCT
TCAAAGCATT ATTCAAAGTT ATCAAAGGAT GCAGGAGCAT TAAATGTTTA TAAATATGTT
GATAAGACAA AAGTTAAAAA TAATCCTAAT GACCAAAAAA TTAAATATGA TATTAAGTTT
GATTCCTATG GATACTTTTT TAAGGATACT TTAAATATTA TTGATAAATT AGATCCTAGA
CTAAGTGATA TTAAGATTAC GGCTACAGAT CAATTTATAA CTGATTTTGA TGAAAACACA
AAGGAATTAG TTATTAAAAA TAGTAATGGA GATATAGATG CTAAAAAGCC AGCATATATC
ACCATAGAAG CAAGTATGAA AAATGTAGGG CCAGGGGAAG TAGTAAAAAA TATTGCATAT
GTAAATGGAA ATCCAACTAA TGAGGTTTCA ACTAGAAAGA ATCCTATAGT GGAATTTATT
CTATCTGCTG AGTATGATGA TCCAAGCTTA CTTGAAGGAG CAGTTTTTAA GTTAACAACT
AAAGAAGGGG AAACTGTTAG GGATATTTAC AATGAAGAAA TAAAAACGTT TACATTTGAA
AATGGAGAGC CTGTAAGCTT TGAATTACCT GATGGAGTGT ACAATTTAGA ACAAATAAAA
GCGCCAGAGG GATATGAGCT AAACAAAACT CCTATTCAGT TTATTGTAAA TGAGGATAGT
AAGGTGGTTA AGGTGCCATG GGAAGGAAAT CCTATAAAGA CTACTGTAAA CTTAGCAATA
CATAAAATAA ATGAAAAGGG AGTGCCTATT TTAGGTGCTA ACTTTAAACT ATTTAAAGAG
GAAAATCCAA AAAAACCAAT AAAATTTGCT TATAATAAAA ATTTAAAAGT TTATGAATTA
GATCCAATGG GGGGCGGAAA GTTAATACCA TCAAAAGATG GTGCCTCTTT TAAAATCAAC
AATTTGCCTT ATGGAAAATA CATATTAAAA GAGGTTAAGG CTCCTAAGGG ATATAAATTA
AGTGATGATA TTTATATAAC TCTAGATTTT GAAGAAAGTT TTTATAGAGT TGGAAAACAA
GGTGAAAAAA TAATTTTAAA TAAAAATACA GAAACAAATA CATACGATAT TTCAGTTGAA
AATGTTCCAA GAATAATACT ACCTGAAACA GGGGGCAGTG GAACTTCTAA ATTTTCATTC
ATTGGAATTA CACTTTTAGC AGCTGTATTA AGCCTAGTTA GTACTACAGA ATTTGTTTTA
AAAGAAAGGG AGAATTAA
|
|---|
| Protein sequence | MKNSKNFNIF TLWSVVISMI VIMIFPGSIV LGEESKSVQN DGAVEITSTT FESNTVAKDI
SNNLRIDYKI LNKDKLKDGD KIVISLPDIF KDIEPKCPDQ HFKDFDVKDG VVTLTFNENV
EKAVTGYMII RFVGNSNIRK GVSYPISIDL NGKPSTVYIT GEEYSHPSSG GQYPLMYKTA
DLPTAATDKE QGREYYGEIV DRNKPIKYFV EINLGDGVNP NTRSYLSNAD FFDNIPKGMA
LDVNSICIKR MGYYDERSSD VTKDFWESNR IKADTKHLEI NFGDIRYERY TVIYETRITS
TESGYLNDAK LYYDDDKELP SKHYSKLSKD AGALNVYKYV DKTKVKNNPN DQKIKYDIKF
DSYGYFFKDT LNIIDKLDPR LSDIKITATD QFITDFDENT KELVIKNSNG DIDAKKPAYI
TIEASMKNVG PGEVVKNIAY VNGNPTNEVS TRKNPIVEFI LSAEYDDPSL LEGAVFKLTT
KEGETVRDIY NEEIKTFTFE NGEPVSFELP DGVYNLEQIK APEGYELNKT PIQFIVNEDS
KVVKVPWEGN PIKTTVNLAI HKINEKGVPI LGANFKLFKE ENPKKPIKFA YNKNLKVYEL
DPMGGGKLIP SKDGASFKIN NLPYGKYILK EVKAPKGYKL SDDIYITLDF EESFYRVGKQ
GEKIILNKNT ETNTYDISVE NVPRIILPET GGSGTSKFSF IGITLLAAVL SLVSTTEFVL
KEREN
|
|---|
| |