| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC03940 |
|---|
| Symbol | |
|---|
| ID | 3256693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 1222782 |
|---|
| End bp | 1226491 |
|---|
| Gene Length | 3710 bp |
|---|
| Protein Length | 1016 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | 638255615 |
|---|
| Product | PM-scl autoantigen, putative |
|---|
| Protein accession | XP_570007 |
|---|
| Protein GI | 58265702 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACCAGTGAA CGTCACTCGA GGGGTTCCTT CTCTATCCAT CTCTGTCTTC GAAAGCCCAT
ACTGCCTCAC ATCTAGCTTA GTCACCTCCT GTCGCACGAG ACCCTCCTCA AGATACCTTC
CAAGAGATTG ATCGCGAAGG CATTTGGGCT CGGTCGACTT TTACCCCCTT ATCGAACCTC
TGCCACCCCC CCTTCGTCCA CCAAGGGGAT CTTCCCCCGT ATCGGGACCA AATTGAAGCA
GGTACAGCGT CGAAGTGCAT ACAACTGTTT CCTCAAACCA GTGTCCAGCT GTCAATCGTA
CCAACAAAAA ATTGAGCCCC TCAGGAAGTC ATTCCGAACA GACGACTCCC TGAGAGACTT
CCGAACACGA CTAGTGAAAT CCATTTTGAT ATTAAGTTAC ACCATGTCTA AAGCTACCTC
CGGAGAAGCA TCGGTACCTT CGCCCACCCA ATCTTTCTCG GAATATCTAC CTTTTTTGAC
TGCCGCTCTA GACCGTCTCA CCACCAATGC CGCCTCTCTG CCCGACAAGA CCGATCTAAA
TTTTCATCGA AGTCTCGATA GAAGGTTCAA CAAGGATGTA GAGAAGACAA GCGAGAGGCT
ACTGGGTATG ACTGAGAGGA TACTGGATCT TATCGAAAGG AGTCAAAAAG AAGCCAGACA
GGGTAGAGAT AAAGGGAAAA CAGCTAAAGT GATGATAAGG CGGAGGAAGT TGGAAGACCA
AGATGACATA ATAGATGGGT ATAGAGGTGC AGTACAGGGT GTAATAGACG GTTTGCTTGA
AGATGCGGTA CGTCGATCTT TACCACTTTG CCCTTGCTGT TCTAATATCT CAAAGGATAT
CAACCTTGAT GAATTGAGAG GAGGCAAGGG GAAAACGTCT GTTACAGTCA AGCCTGCCCT
GGTTGCCCAA GCTGGTAAAA AAGTCAGTGA ATCGCATTAT ACCCTTGCTT GTTATGCTCA
CCATATAGTA CAGATTCCCG GCCCATTCAC TGAGCGTCTG CCAGCAAATA TTATTCATGC
GTCTGATCTC ACCAAACCTC AGCTTCTCTT CCATGACGCT CCTGACAATG CTCGGACTTC
TGAATCCTGG AAGCCGTCTC TAACGACCAA GCCCCATGCT ATGGTCCCTC TTGGATTCAA
GGCACCTCTC GATTATGAGT TGACCTCGGA AGAAGAGATG GACCCGTCAA AGGCAGCTCT
AAGACGCGAG AAAGAGATTC GCGCCCGAAC GCACCCCTAT TATTATGAAA CTAAACACTT
ACCATACCCC ACTTCATTGT TTATTGATTC AAAGCCTGTA CCCCCTCAGA GCTTCGATGA
GACGCCTTTC GAGTTTGTCG ACACGCCGGA AAAACTTCAT CGAATGGTTG AAAAACTCAA
GCAGGCAAAA GAAATCGCTG TTGATCTGGA GCATCACGAC ATGCGAAGCT ATGCGGGTTT
CACTTGCTTG ATCCAAATTT CGACTAGAGA AAGCGATTGG GTCGTAGACA CGCTGGCGCT
CAGGAAGGAA ATCCAGCAAG ATAAGTTTGG AGACGTTTTC ACCGACCCTA CTATTGTCAA
GGTAAGACGG CTTTTACATC CATTACCGTC TTGTACTCAT ACACTGATGT CTTCTAGGTC
TTTCATGGTG CCGATAGTGA TATCATCTGG CTCCAACGGG ATTTCGAAAT CTTTGTGGTC
AATTTGTTCG ATACATATAG CGCCTGTGTC GTCCTTGGTG CGCTATATCT TCTTCTTGGT
ATCACTCATG TCTAACTTGA TATCTATTGT AGAAATGCCA CAGCGATCTC TCTCAGCCCT
TCTTCAGCAT TATTGTAACT TTGAGGCCGA CAAAAGATAT CAGCGGGCCG ATTGGCGAAT
TCGTCCTTTG CCAGATGGCA TGTTGTATTA CGCTCGATCT GACACCCATT TCCTCCTTTT
TATCTACGAC AATCTGCGCA ACGCCCTTCT TCACAAGTCT TCTCGTCCTT CTTCGCCAGC
TAACTGTGGT ACTATCGTCC TGGATAGCGC CAGGCCTAAT CCTCAAGAAG CTATGCGCGA
AGTCCTTGGC AAGTCTGCTG ATACGGCATT GAAAATGTAT GAAAGAGATT CGTACGATAT
AGTGACGGGG CGAGGTTCTG GGGGTTGGCT GGCTGCAGGG AAAAAGTGGC TACCTAAAGG
AGAGATTGAG CAAGAGTCTG GCTGGGTTTG GAGACATTTG CATGATTGGC GAGATAGAGT
GGCGAGAGAG ATGGATGAAA GTCCTTTGTG AGTAGAGCAT TGTTCTTTCG GAAATTTATG
CTAACGGTAT TTTCGACAGC TATATTATGC CCAACAATAT GTTACGAGAT GTTAGTACGG
CTGATAATAC CGCCAACCTC AGTCGTATAA TCAGAAGAGA TCGAGCTCCT ATTGCTGCTC
AGTATATTCC TGAAATTACA TCTATCATTG TCGCCGCGAA GGAAAAATTC AAGGAAATCA
CGGCTGAGCG AGCAGCTAAT CCTCAAGTTC AGGAGATGGA GAAGATAGGA GTGAAGGAAA
TCGGAGCGAA TGATGTGAAG AAGGTCCCGG TTGCGGCACT GGCCGTTCCA TCTGTACCCC
TAGCAAGCAC CACCTCAAAT ATATGGGACG TCGCTGCTAA ACCTACCTCT ACTAGAACAA
ATGCCAAGTC AGGTCTTTTC GGCTCTGCCA TCAAATTCTC TCAACCGAAG CATGCTTCGG
GTTATATTAC CGCTTCAAAA TCAGGGCAAT CAGCTTTGTT CGGGGTGACA CTAGACCGAG
CAAGCAATCA GAAATCATCA TCTGCTGCTT TGACCCTCCG TGAGAGGGAA TTATCCCCCG
GTTTCCTCAA GGTCATGGAA TCTATGCGCA TGGACTTACA TCCCAAGGGT ATGACCTCGG
GAAGCAGCGA AGGCGATGGT AAAATGGGGC TGAACCCTGA AACCGTGCCG TTTATCCCTT
CCAACCAAAG AAAGACGACG GCGACGTCTT CCTTGGAAGT GAGGGGGAAG AGACCCTTAG
GTTTGACGTC GGAGTCAGCG CACCCCCAAT CCGGCCAGAA AGCCAGCTCC TCCACCGCAT
ATGCACCAAC TTCCGGTATC CCTTCAACGC TCATCAAAGA AATGTCTCCT CAAAAGTCAT
CAAAATCTGG AACAGTTGAT GAGGGCGTTG TTCAGGTGAA AAAATCAAAA AAACAAAAGA
AAAGAGAGCG AGCTTCTACG ACCGATAGAG CCGGCGATGA CAGCGATAGT AAAAAGGCAA
AGTTGGGCAC TGACGGCGAT GGAGAGTTCG GTGCTGCCAC GCCGCCAGCT CAGGCCGTAA
TCCCGTCTGT TGAGCTTTTG AACACAGTAA TTGTTGGGGA GGGTGGCAAC GCAAATAAAA
GTACAGCTTC CAAGAACAAG AAGAAGAAGG TGAAGCCCGA AGATATACCA GCATTTGATT
ATGCCAGCCA ACCTAATTTG TTGGATCAAC CACACTCTGT GATCGCCCAG GATGATGCAA
AGAAGAAGAA AAAGAAGTTC AAGGAAGCAA GGCCTTCAGG TAAGTCCTCC CACCGCTTCC
TACGCCCTGG GTTGCATCAC TTATCGTCAT CGTTCAGGAG CTGGGATCGT TGAGGTACCG
ACGTTCGGGG CGAGACCTGC GAGAGACTTG AGCCAGCCTA AGCAGGGTAA TAAGTCTGGG
ACCTTTGCTA GATAGACAGG GATCTAAAGA CGTAATTTGC AAATTTGATG
|
|---|
| Protein sequence | MSKATSGEAS VPSPTQSFSE YLPFLTAALD RLTTNAASLP DKTDLNFHRS LDRRFNKDVE
KTSERLLGMT ERILDLIERS QKEARQGRDK GKTAKVMIRR RKLEDQDDII DGYRGAVQGV
IDGLLEDAVR RSLPLCPCCS NISKDINLDE LRGGKGKTSV TVKPALVAQA GKKVSESHYT
LACYAHHIVQ IPGPFTERLP ANIIHASDLT KPQLLFHDAP DNARTSESWK PSLTTKPHAM
VPLGFKAPLD YELTSEEEMD PSKAALRREK EIRARTHPYY YETKHLPYPT SLFIDSKPVP
PQSFDETPFE FVDTPEKLHR MVEKLKQAKE IAVDLEHHDM RSYAGFTCLI QISTRESDWV
VDTLALRKEI QQDKFGDVFT DPTIVKVFHG ADSDIIWLQR DFEIFVVNLF DTYSACVVLE
MPQRSLSALL QHYCNFEADK RYQRADWRIR PLPDGMLYYA RSDTHFLLFI YDNLRNALLH
KSSRPSSPAN CGTIVLDSAR PNPQEAMREV LGKSADTALK MYERDSYDIV TGRGSGGWLA
AGKKWLPKGE IEQESGWVWR HLHDWRDRVA REMDESPFYI MPNNMLRDVS TADNTANLSR
IIRRDRAPIA AQYIPEITSI IVAAKEKFKE ITAERAANPQ VQEMEKIGVK EIGANDVKKV
PVAALAVPSV PLASTTSNIW DVAAKPTSTR TNAKSGLFGS AIKFSQPKHA SGYITASKSG
QSALFGVTLD RASNQKSSSA ALTLRERELS PGFLKVMESM RMDLHPKGMT SGSSEGDGKM
GLNPETVPFI PSNQRKTTAT SSLEVRGKRP LGLTSESAHP QSGQKASSST AYAPTSGIPS
TLIKEMSPQK SSKSGTVDEG VVQVKKSKKQ KKRERASTTD RAGDDSDSKK AKLGTDGDGE
FGAATPPAQA VIPSVELLNT VIVGEGGNAN KSTASKNKKK KVKPEDIPAF DYASQPNLLD
QPHSVIAQDD AKKKKKKFKE ARPSGAGIVE VPTFGARPAR DLSQPKQGNK SGTFAR
|
|---|
| |