| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CJJ81176_pVir0007 |
|---|
| Symbol | |
|---|
| ID | 4682063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. jejuni 81-176 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008770 |
|---|
| Strand | + |
|---|
| Start bp | 4452 |
|---|
| End bp | 6338 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 639832910 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_980066 |
|---|
| Protein GI | 121582664 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATA AGAAAATAAC CCCTGCAAAA TGGGTATTAA TGTTTATAAC TAGCATTATT
TTAGGAATAA TTCTTTATTT ATTAATGGTA AAAATTATTT TCAAACCTGA TTTATTAGTA
ACACATCAAG TTGGGTTACA AATAATTCAT AATTTAGGAA ACCCTGCATT AAAACTTAAA
GCTTATGTAG CAGTTTTTGC TCTCATTTTG CCTTTTATAG TCTGTTTGAT TTGGTTTTTT
ATGCCACAAA TGAATTTAAA AGAAAATTAC GGAAATGCAA GATTTGCTAA AGAAAAAGAT
TTTGAAGAAA TGAATATTTG CAATGATAGG GGTTTAATTT TAGGTTGTAA TATTAAAAAA
GGTATAAAAG GCGATGAAAT AGAATACATC AGAGCTAAAA TGCCCCTAAG TGCGTTGGTG
GTTGCACCAC CAGGCACAGG TAAGACTTCA GGTATCATTT TACCTAATTT ATTTACAGTT
CCTAATTCTA CTTTAGCACT TGATATTAAA GGCGAACTTT ATGCAAAAAG TGCAGGTTAT
AGAAAAAAAT ATTTTAATAA TGAAATTTTA TTATTTGAAC CTTTTTCAGA TAATAATACT
TTATTTTTCA ACCCTTTTGA TAATTCTATA GTTAAAGATA TGAATTTTAT CCAAATGATG
AAATTAGCAG ATCAAATCGC AGGAACTATA TTTGTAGCTG AAAAAGGGAA AGAAGGCGAT
CATTGGGTTA CAAGTGCGAA AACTCTTTTC ACTTTTTTTG CATTATACAA TATGCAAAAA
CACAAACATA CGAGTTTAGG AGATTTAACT CAAGCTCCAA AAAAAGATTA TTTTAATGAG
TTAAATGAAG AATTCGGAAA AGAGTGTTTA ATTGAAGATG AAGACACAGG AGAAGTTTCA
AGAGATTATA ATGTAGATAC TTTCAAAGTA TTTTTAAAAC AAGTGGCTAA TGATGAAAAT
CTTGATGAGA TCGTTAGAAA TCAAGCAAGG GCTTATCAAA CGGCTGCCGA GCAAGAATTT
GCAAGTATTA AATCAACTTA TGATACTTAT ATGAAAGTTT TCACTAATCC ACAAGTGGCT
AATGCAACTT CAAAAATGAA TTTTAGATTT GAAGATTTAA GAGAAAAAAG AATTACTATG
TATGTAGTAA TACAAACCGA AGATATGGAT ATATTAGCTC CTTTGGTGCG TATTTTTATC
GAAAGTTTAT TTAAAAAACT AATGAGCGGA CAAGAAAATT CTAATCCTGA CAAATTCATT
TATTGCTTAT TAGATGAATT TGTGAGATTT GGAAAAATGC CTTTTTTACT TGAAGCACCT
GCATTATGTA GATCTTATGG ACTTATTCCT GTATTTGTTA CTCAATCATA CGAGCAAATT
AGAAAATATT ATGGCGAAGA TGATTTAGGA ATTATTAGAG CAAATGCAGG TTATCAAACT
ATTTTTAGAA TGAATACAGA AAAAGACGCT AAAGAAATTA GCGATCTAAT CGGCGATTTT
ACCAGAGAAA AAACATCATC ATCAAAAGGA ACTTTTGATT TCTTTAAAAG TAATAACACT
GTATCCAAAG AAGGTTATAA ATTGATAACT TCACAAGATA TTAAAAATCA ATCCAGTGAA
GATATTTTGA TTTTAGTAAC AGGATTTTTA TCAAGACCTA TTAAAGCTAA AGTGCCTTAT
TGGTTTAAAA ATCCAAAACT TAAAGGAGCG GATAAGATTT CTTTAGAAGA TAATAATACT
AATACGGAAG GAGAAAGCAA AAATGATGAG ATTAATAATG ATGATAGCCA AAATGTTAAT
CAAGAACAAA ACTTTACTCA AGAAAATTCA AGCTCTAAAC AAATTTTCGA ACTTGAAGAA
CTAGGAATAA AGGTAAAAAA AGAATAA
|
|---|
| Protein sequence | MNDKKITPAK WVLMFITSII LGIILYLLMV KIIFKPDLLV THQVGLQIIH NLGNPALKLK
AYVAVFALIL PFIVCLIWFF MPQMNLKENY GNARFAKEKD FEEMNICNDR GLILGCNIKK
GIKGDEIEYI RAKMPLSALV VAPPGTGKTS GIILPNLFTV PNSTLALDIK GELYAKSAGY
RKKYFNNEIL LFEPFSDNNT LFFNPFDNSI VKDMNFIQMM KLADQIAGTI FVAEKGKEGD
HWVTSAKTLF TFFALYNMQK HKHTSLGDLT QAPKKDYFNE LNEEFGKECL IEDEDTGEVS
RDYNVDTFKV FLKQVANDEN LDEIVRNQAR AYQTAAEQEF ASIKSTYDTY MKVFTNPQVA
NATSKMNFRF EDLREKRITM YVVIQTEDMD ILAPLVRIFI ESLFKKLMSG QENSNPDKFI
YCLLDEFVRF GKMPFLLEAP ALCRSYGLIP VFVTQSYEQI RKYYGEDDLG IIRANAGYQT
IFRMNTEKDA KEISDLIGDF TREKTSSSKG TFDFFKSNNT VSKEGYKLIT SQDIKNQSSE
DILILVTGFL SRPIKAKVPY WFKNPKLKGA DKISLEDNNT NTEGESKNDE INNDDSQNVN
QEQNFTQENS SSKQIFELEE LGIKVKKE
|
|---|
| |