| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3724 |
|---|
| Symbol | alr |
|---|
| ID | 4185105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 4298636 |
|---|
| End bp | 4301164 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638073711 |
|---|
| Product | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase |
|---|
| Protein accession | YP_680300 |
|---|
| Protein GI | 110640090 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase
[COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTATTACT GGTCTATTAC AAGCAATTCT CAAAACTTAC TGAATCCATA CCTTCACACG
ATGAAGAGCA TTGATATATC TGTAAATGAA CTGCCCGGGA TTGTTCAGGG TGAATGCATA
CAGCAATCGA CAGAGCCAAA CACATTCATA AAACAATTAG TAATTGACAG CAGAAAATTG
ATGGCTCCCG CAGGAGCTGT TTTTTTTGCT ATTGATGGAA AACATCACGA TGGGCACGCA
CACATTACAG AGATGTATAA AAAAGGTGTG CGTATTTTTA TTGTTGAAAA AAGCATTTCG
TTAAATGAAA TTCCGCAGGC AGCATGTATA CGTGTTAAAT CGTCTGTTAG TGCCTTGCAG
GCATGTGCAG CATACAGAAG AAAACAGCTT GACATACCAA TCGTGGCGAT TACGGGAAGT
AATGCAAAAA CAATTGTAAA AGAGTGGCTG AGCCAGACGG TAGCGGCAGA TTATTCGGTT
GTTAAAAGTC CTCGCAGCTA CAACTCGCAG ATCGGCGTAC CGCTTTCAGT ATGGGCATTA
AACGAAAGGC ATACCATAGG TATTTTTGAA GCAGGCATTT CTACTACAAA GGAAATGCAG
GCGCTTCAAA AAGTAATTGA ACCAACGATT GGCATTTTCA CTAATATCGG ATCTGCGCAT
GATAAAGGGT TTAAAAACAG AGAAGAAAAA ATTCAGGAGA AACTGAAATT GTTTGCTGAC
TGTAAAGTGG TAATATATTG CAGCGATCAC GAGGAGATTC ATGCAGAAAT AACGGCACAG
CACTTGCCAA CATTCAACTG GTCCCTGCAA AGCAGCGCCA CAATTGAATA CAGCATAGCA
GCAAAAGATT CTTTTCAAAC ACAGATTGAA GTAAAAACAA AAGAACATCA AGGATTTTTT
TATTTGCCGT TTGTAGATGA TGCTTCGATT GAAAACGCAC TGCACGTAGC AACAACGTTA
TTCTATTTAG GATATTCGAT ACAGGAAGTG TCCAGAAAAA TTTCAGGCTT ACAAGCAGTT
GGCATGCGCC TGGAACTAAA AGAAGCAAAT AACGATTGTT ATCTCATTGA TGATTCGTAT
AACAATGACC TGGCGGGGCT TTCCATTGCA CTGGATTTTT TAGAACACGT AAAACAAAGC
GAAGTAAAAA CGGTCATCCT TTCTGATGTA TTGGAGTCGG GCCTGGATTC AGCTGTACTA
TACAAAGAAG TTGCTTCATA CCTTACAACG GCACAGGTAC AACGCGTGAT TGCAATCGGC
AGCCAGATTA CAGAACTTAA GAAGTGGTAT AACGGCAGGG CTGAATATTA TCCGACAACG
GAAGCATTTA TCAAAGACTT AACTAAAACT GTTTTTGAGA AAGAGATTGT TCTTGTAAAA
GGTGCGCGCA TTTTTCAATT TGAAAAAATT GTTTCCCGCT TACAGCACAA GGTGCATGAG
ACCGTTCTTG AAATAAATCT TGACGCACTC ATTCACAACC TGAATGTATA CCGCAGCAAG
CTTAAGCCCG ACACAAAGAT CATGTGTATG GTAAAAGCTT TTTCATACGG CAGCGGCGGT
TTTGAAATTG CACAACTGCT GCAATATCAT GGCGTAGATT ATCTTGCAGT GGCATATGCA
GATGAAGGAG CAAGATTGCG GGAGAATGGT ATCACCTTGC CCATTATGGT AATGAACCCG
ACGCTATCAA GCTTCGATAC TATACTGCGT TATGAACTGG AACCGGAAAT ATACGAGCCG
GTTTTATTGA AACAGATTAT TGAGTATGCG CAGGCAAAAC AAAAACACAT CGGTATTCAT
ATCAAGATTG ATACCGGCAT GAAGCGCCTG GGCTTTGAAA AGAAAGATGT CACTGAAATT
GCGCAGCAAC TAAAACATAC TGAATTTGTG AAAGTGTATT CTGTTTTCAC ACACCTGGCT
GCTTCAGATA GTGCGGAGCA TGACGCGTTT ACCGCGCATC AATTAAACTT GTTTGACGAA
GTTATAAGCC TGTTTCAGAC TACGCTAAAT TACTCATTTA TAAAACATGC AGCGAATTCT
TCCGGTATCA TGCGCTTTAA AGAAGCACAC TATGATATGG TACGCTTAGG CATTGGTTTG
TATGGCGTTG AAAGTGCTGG TTTATATCAA AACGAACTTC AGGCAATCAG TGTATTCAAA
ACACATATTT CTCAGATAAA AGAAATTACG ACAGAAGAGT CAGTAGGATA TAGCCGTAAA
GGCCGTGTTA CAAAGCCTTC AAAAATAGCG ACCATTGCTG TTGGTTATGC CGATGGCTAT
AACCGCAGAT TTGGGAATGG TATCGGAGAA GTACTCGTTA ATGGTGTGCG TTGCCCCATC
ATTGGAAATG TGTGCATGGA CATGAGCATG GTTGATGTTA CCGATGCACA TGCTGCACAA
GGGGATGAAG TAATTTTATT CGGACATAAT CCTACTGTTT CAGATCTGGC TAAACGCATT
GGTACAATAC CGTATGAAAT ACTTACCAGT GTTGGCGCCC GCGTGAAGCG TATTTTTTAC
TCAGAATAA
|
|---|
| Protein sequence | MYYWSITSNS QNLLNPYLHT MKSIDISVNE LPGIVQGECI QQSTEPNTFI KQLVIDSRKL
MAPAGAVFFA IDGKHHDGHA HITEMYKKGV RIFIVEKSIS LNEIPQAACI RVKSSVSALQ
ACAAYRRKQL DIPIVAITGS NAKTIVKEWL SQTVAADYSV VKSPRSYNSQ IGVPLSVWAL
NERHTIGIFE AGISTTKEMQ ALQKVIEPTI GIFTNIGSAH DKGFKNREEK IQEKLKLFAD
CKVVIYCSDH EEIHAEITAQ HLPTFNWSLQ SSATIEYSIA AKDSFQTQIE VKTKEHQGFF
YLPFVDDASI ENALHVATTL FYLGYSIQEV SRKISGLQAV GMRLELKEAN NDCYLIDDSY
NNDLAGLSIA LDFLEHVKQS EVKTVILSDV LESGLDSAVL YKEVASYLTT AQVQRVIAIG
SQITELKKWY NGRAEYYPTT EAFIKDLTKT VFEKEIVLVK GARIFQFEKI VSRLQHKVHE
TVLEINLDAL IHNLNVYRSK LKPDTKIMCM VKAFSYGSGG FEIAQLLQYH GVDYLAVAYA
DEGARLRENG ITLPIMVMNP TLSSFDTILR YELEPEIYEP VLLKQIIEYA QAKQKHIGIH
IKIDTGMKRL GFEKKDVTEI AQQLKHTEFV KVYSVFTHLA ASDSAEHDAF TAHQLNLFDE
VISLFQTTLN YSFIKHAANS SGIMRFKEAH YDMVRLGIGL YGVESAGLYQ NELQAISVFK
THISQIKEIT TEESVGYSRK GRVTKPSKIA TIAVGYADGY NRRFGNGIGE VLVNGVRCPI
IGNVCMDMSM VDVTDAHAAQ GDEVILFGHN PTVSDLAKRI GTIPYEILTS VGARVKRIFY
SE
|
|---|
| |