| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3715 |
|---|
| Symbol | |
|---|
| ID | 4184493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 4288197 |
|---|
| End bp | 4291532 |
|---|
| Gene Length | 3336 bp |
|---|
| Protein Length | 1111 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638073702 |
|---|
| Product | PKD repeat-containing protein |
|---|
| Protein accession | YP_680291 |
|---|
| Protein GI | 110640081 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.276644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTA ACCGTACTTA CCTATTCCAG CTTGTATTTT TTTTATTTGT TTCCCTGCCA
GCGTACAGCC AGTTTGTGCC CGAAAAAATA AAAGGCGGCT TATTTATTGA AAATAAAGGG
CAGTGGGAAG AGAATGTACT CTATCGGTCT GAAATTCCTT CCGGGCAGTT ATACATTGAA
AAAAACCGTT TTCTGTTTAA TTTTTACGAT CGAGAATCTC TGGCAAGTCA TCATAGCCAT
GGCCACAGCA ATCCTTCTGC AAATACATCC AGTCAACGAA GCGGAGGCGG CGATATTTTA
AAACCCGGAC CAGTTAAGGC ACATGCCTAC GAAGTAGCTT TTTTAGGTTG CAATCCGATT
TCTTCTACTG ATGGAATCGA TCCGACAACA TATAATTACA ACTATTTTAA AGGTAACGAC
AAGAGTAAAT GGGGTGGCAA TGCCCATGCT TATGGAAAAA CGATTCTTAA TGATATTTAC
CCTAAAACTT CATTGGTTTG TTTTGGGCAG GAAACAGGTT TTAAATATGA ATTTCATTTG
AAGCCCGGCG CAAATCCTGC ACTTATTCAA TTAAAATATA ACGGCGTCGA TAGTGTTTAT
TTAAAAAATG GTGAGCTTAT CATTGAAACG TCAGTAACTG ATTTTTATGA GCAGAAGCCG
TTTGCTTATC AGGAAATTGA TGGCAGTAAT GTTGCTGTGC CATGCGAGTT TCGCTTGAAT
GATAATGTGC TGAGTTTTGT TTTTCCGAAG GGATATAATA AACGGTATCC GCTTGTAATT
GATCCGCAGT TAATCTTTTC TACGTATTCA GGTTCTTATG TAGATAATTG GGGTAATTCA
GCAACATATG ATGATGATGG CAATACGTAC ATGGTCGGAA TTGCTTTTGG ATTCGGATAT
CCGGTTACTA CAGGAGCGTA TCAGGTTAAT TTTGTAGGAA ATGATTTATA TGATGTTGAC
ATAGCAATTA TGAAATTCGG CCCTTTGGGA GAATTACGTT ATGCTACATA TTTAGGAGGT
ATTGAAACAG AAATGCCGAG CAGCTGTATT GTAAACAGCA AAAAAGAACT TGTGCTTTTT
GGATTTACAA GCTCAGGTGG TAGCTATGGC AAAGCATTTC CTACTACTAC AGGAGCCTAT
GATGAAACAT TTCATTATGG TGATTATTCC ATGCCATTTG GCCCCTATGA GCCGATTTTC
TTTGATGAAG GAAGCGACCT GTTTATTTCT ATACTCAGCG AAGACGGTAG CAATTTAAAA
CATTCAACAC TAATTGGAGG CAGTTCTAAC GATGGTTTTT CCAGTGAGTA CGAACCCATT
ACAAGAAACT ATGGAGACCA GCTCAGAGGA GAAATTTTTT GTGATGAGCT TGACAATGTT
TATATCGTAA CAAAAACATA TTCACCGGAT ATAATTAACA CTTCAGTTCC TGGTTATGAT
AAAACGTTTA ATGGCATCAT GGATGCTTAT GTTTGTAAGC TTACAGGAGA TTTAAGCACC
ATGCTGTGGA ATACGTTCAT TGGGGGGGCA GGCTATGATG TTGGTTATTC TATACGCGTA
ACTACAGACA AAACAGTTTA CATAACAGGC GGCACAACCA GTACAGATTT GCCCGGTACA
GCTTCAGGTA TTAAAACAAC CTTAGCTGCT GGAGATATTG ATGGCTTTGT TGCACACATA
AGTGCGGATG GCACCTCGTT ATTACATGCT ACTTATGTGG GAACGGAATC GTATGATCAA
TGCTTTTTTA TCCAACTCGA TGCCCTTGAA AATATTTATA TATTAGGACA ATCATTAGGT
GACTACCCTA TGTCACAAGG GGTATATGGA AAAGCTAAGA CAGGACAATT TATTCAAAAA
CTTAATCCGA CTCTTTCTCA ATCATTGTTA TCTACAACGT TTGGTTATAC AGAACATCAG
GTAAGTATTG TTCCGACTGC ATTTTTGGTT AACAGCTGCG ATAATATTTT AATTTCAGGA
TGGGGAGGTA ATACAAATAT TAACCCATGG TATCCGCGTC CTCAGCGTCC AAATACAAAT
CCAAATCAAT ATTTAGGAGG TACTACAAAT AATTTACAGA CCTCTCCCGA CGCTCTTTAT
AAAACTACCG ATGGTTCTGA TTTTTATCTA CTCGTGTTAG AAAAAGAATG CAAAAGTCTG
CTTTATGCAA CATTTTATGG CGGAGTCGAT GAAGATGATC ACGTTGATGG CGGTACAAGC
CGTTTTGATA AAAACGGTAT TGTGTATCAA TCCGTTTGCG GTAGCTGCGG AGGTACGTCC
AGATTTCCTA CAAGTGACAA TGCTGTTTCA AAAATTAACA GATCTGACAA CTGCAACAAC
GCCTGCTTTA AATACGATCT TTCCAGCCTG CGTGCTGACT TCATCATGGA TCCGCTTATC
GGCTGCGGAC CAACTACTGT TACATTAACC AATACCAGTA CGGGTGGTGT AGCATTTGAA
TGGGACCTTG GTGATGGCAC AAAAATAAAC GGACCAGGAC CTGTCACGCA TACATATCCA
ACGCCCGGTA CATATCACAT TAAACTGATT GCTACAGATC TTACAACCTG TATCGGAAAA
GACACCGCCA CAAAAACGCT GAATGTATTT GCCATTCCAG GCATTGGCAT CACCTTGTCG
GATACTACTA TATGTCCCGG AGATACAATC AGCATTCTGA AAAACTGTAA TCCATATTAT
ACTTACAATT GGGCTCCGTC AATTGAGATG ATTAACCCTG CAGTATGCGA TGCGCAGTTT
TTCCCAAGTA TTACCCGTGA TTATTACCTG ACGGTTATTG ATACAAGTAC CTGCGTATAT
ACAGATACAC TTACTATCCA TGTGCCTACA TTAATACCCG GAATCAATTG GGAGAACATG
ACCCATTGTT ATGGCAAACC TACCATTGGC TTTAGTAACC CAAGCAAAGG CAGGCTAAAA
TACCTTTGGG ACCTTGGCGA CGGAACAACT ACAACCGTAC AATCTCCTGT TCATGAATAT
GCCAAAGGCG GCAAATATAT AATAAAAGTA AAGGTCTATG CCAATGATAC CTGTTTTATA
GAATCTACTA TACCTCTTGT ACTCGATGAT ATTCAGATTC CGAATTTGTT TACCCCCAAT
GATGATGGTA AAAATGATTG CTTCGAAATA AAAGGCTTGT ATCCAAACTG GAAGGTTGAA
GTGTATAACC CATGGAGCAA AGCTATATTT AAAACAGATT CGTATAACAA TGAATTCTGC
GGAGAGGGTC TGAGTTCGAG TGTATATTAT TACCTGGTTT GCCCGCCATA TGGTAAATGC
TGTAAAAGCT GGGTTCAGAT CATTATTGAT AAATAA
|
|---|
| Protein sequence | MNSNRTYLFQ LVFFLFVSLP AYSQFVPEKI KGGLFIENKG QWEENVLYRS EIPSGQLYIE
KNRFLFNFYD RESLASHHSH GHSNPSANTS SQRSGGGDIL KPGPVKAHAY EVAFLGCNPI
SSTDGIDPTT YNYNYFKGND KSKWGGNAHA YGKTILNDIY PKTSLVCFGQ ETGFKYEFHL
KPGANPALIQ LKYNGVDSVY LKNGELIIET SVTDFYEQKP FAYQEIDGSN VAVPCEFRLN
DNVLSFVFPK GYNKRYPLVI DPQLIFSTYS GSYVDNWGNS ATYDDDGNTY MVGIAFGFGY
PVTTGAYQVN FVGNDLYDVD IAIMKFGPLG ELRYATYLGG IETEMPSSCI VNSKKELVLF
GFTSSGGSYG KAFPTTTGAY DETFHYGDYS MPFGPYEPIF FDEGSDLFIS ILSEDGSNLK
HSTLIGGSSN DGFSSEYEPI TRNYGDQLRG EIFCDELDNV YIVTKTYSPD IINTSVPGYD
KTFNGIMDAY VCKLTGDLST MLWNTFIGGA GYDVGYSIRV TTDKTVYITG GTTSTDLPGT
ASGIKTTLAA GDIDGFVAHI SADGTSLLHA TYVGTESYDQ CFFIQLDALE NIYILGQSLG
DYPMSQGVYG KAKTGQFIQK LNPTLSQSLL STTFGYTEHQ VSIVPTAFLV NSCDNILISG
WGGNTNINPW YPRPQRPNTN PNQYLGGTTN NLQTSPDALY KTTDGSDFYL LVLEKECKSL
LYATFYGGVD EDDHVDGGTS RFDKNGIVYQ SVCGSCGGTS RFPTSDNAVS KINRSDNCNN
ACFKYDLSSL RADFIMDPLI GCGPTTVTLT NTSTGGVAFE WDLGDGTKIN GPGPVTHTYP
TPGTYHIKLI ATDLTTCIGK DTATKTLNVF AIPGIGITLS DTTICPGDTI SILKNCNPYY
TYNWAPSIEM INPAVCDAQF FPSITRDYYL TVIDTSTCVY TDTLTIHVPT LIPGINWENM
THCYGKPTIG FSNPSKGRLK YLWDLGDGTT TTVQSPVHEY AKGGKYIIKV KVYANDTCFI
ESTIPLVLDD IQIPNLFTPN DDGKNDCFEI KGLYPNWKVE VYNPWSKAIF KTDSYNNEFC
GEGLSSSVYY YLVCPPYGKC CKSWVQIIID K
|
|---|
| |