| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3343 |
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| Symbol | aefA |
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| ID | 4184593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3816115 |
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| End bp | 3818556 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638073332 |
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| Product | mechanosensitive ion channel protein |
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| Protein accession | YP_679922 |
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| Protein GI | 110639712 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.183155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGGT TTCTTCTCAT TGTTGCTGTA CAATTTTTAA TGATAGCCGC ATCTGGCCAA
ACGCTTTCAG CTAAACCGGA TACGGCTCTA CAAGAGGAAC TCTTATACCA AAAATCATTG
ATAAAGGACG AAGCAGGCAA GCGTGCAGAA CAATTTAACG AAGACAAGCT CGTACTGAAT
CAGGAGCTTG CATTAGAAAA AGTTTTACAG GCTGCACGTA TCGCAAAACA ATATCTGAAA
AGTGATATGG ATACAGCAGC ATGGCAGATC CAGATTGATG ATATACAAAA AAAATATATA
ATCGCCGGTG ATGGTGTATT TTCAAATAAA GGTACAATAC AGACGCATCG AAATCTTACA
GTAACTTCAA AAATATTGTG GGAATTATTA AATGAACTCA ATGCCCGGAA AGTTAAAATC
AATATATACA AACATAAACT GGTTGATTGC AGGAATGACA TAGACTCTTT GAGCAGTGCC
CCAGCCCTGT TCATCGTTTC AGAAGACTCC GTACGATTGA GAGGCCACCT GCAAAGACTG
TCTGTTATAA GCAGAGAAGT ACGTCCGGTG AATAATGCGT TGGAGCAATC CATTAACAGG
TTGCAAAAAC TAAAGGAGCA GATCGATTAT ACGGTATTTG AAATAATGGC TGCCCTGGAT
CATATTGAAC AAAGTGAAAT AGAACTTTCC AGCAGATCGT TTGAGAAGGA AATGAATTAC
TTATGGGAGC CGTCAATACC TGAGCGGCCC TTTCATGAAA TTATATACCA GTCTTTAGAG
AAAGATTCAC TAACGCTTAA ATACTACGCT GCTAATAATA GTGGCCGTGT GATCTTGCTG
TTGATATTTA TTAGTATGTC GGTTTATTTT ATTTCTTCAC TCAAAAGGAA AGCACAGAAT
GAACACTTGA TCCGGTCAGA TTTTTCCGAT CAGTTGGTGA TAAAATATCC GTTACTTTCC
GCTCTGATGA TTGTAATAAA TATTTTTCAG TTTATTTTTC CTAATCCGCC TTTTATATTC
AACTGCTTGT TGTGGGTAGT ATCTACTTTC TGTCTCACAA TTATATATAT GAATTATATC
ACGAAGTATT GGATGTGTTT CTGGTTATTA ATGTGGATGC TGTTTTTACT TGCATGCGGC
AATAATTTGA TTTTGCAGGC TTCAATGACT GAAAGATGGA TCATGTTGGC GATTGCCTCG
GCAGGTTTGT CGTTAGCAGC ATTCATAGCA TCAAAAAAGA GAAGGGAAGA GTTGCGGGAA
AAATCGACCG TATACTTTAT TATATTTATT ATCATCATAG AAACGGCGTC TATTGCTGCT
AACATGTACG GCAGATTTAA TATATCAAAG TCATTATTGA CAAGCGGTTT TATTAATTTG
ATTATAGCCA TTTCATTTCT GTGGACAGTC AGGCTCATCA ATGAAGGGTT ATCATTAGCA
TCCCGAATGT TTCGTACGCC CGAGAGACGC TTATTTTATA TAAACTTTAG TGTTATTGGT
CACAAAGCAC CCTTTTTTTT ATACGCGTTG CTTGTGATCG GATGGTTCAT TGTTTTTGCC
CGGAATTTTT ATGAATTTAA TTTTGTCACA CAGCCTGTAA CCGATTTTAT ACATTCAGAA
ATTCATATCG GTAATTATAG CTTTTCTATT TACAGCGTTG CTTTATTCAT CGTAATTCTG
CTTGTTGCTG CAATTGTATC AAAGATTATA TCTTTCTTTG GAGCAGACAT ATCTGCATCT
GCTGCAGATA ACAGAAGGCC GACCCTGGGA AGCTGGATAT TGCTGATACG TATCACCATT
ATTGTTACGG GCTTATTAGT AGCCTTTGCT GCTGCTGGCA TACCTTTAGA TAAGGCTACG
TTTGTACTGG GTGCATTAGG CGTCGGAATT GGTTTCGGGC TTCAGTCACT GGTGCAGAAT
CTGGTCAGTG GTATTATACT TACATTCGAA AAACCAGTTA ACGTTGGGGA TTTTGTTGAA
ATAAAAGGTC AGAAAGGTAC TATTAAATCA ATAGGTTTTC GCAGCAGTAC ACTATTAACG
ATTGAAGGAT CAAAGGTGAT CATACCCAAT GGTGAAATAT TAAATGATAA TGTAACTAAC
TGGACACACG AAAGGGGTAT GAACCGCCGC ACACAAATAG TTATAGGGGT GGCTTATGGT
ACAGACCTCG AATCAGCAAG AAAAATACTT TTAGATCTGG TCGCTGATCA GGATAGTATT
TTAAAGAATC CAACACCTTT TGTACTGATA TCAGATTTTG ATTCAAGCTC TATCAGGCTG
CAGCTTTTCT TTTGGACATC CACACCTTTT GCAGGTAATT TTGTAAAAAG CGAATTAATC
ATTGCTATTC AAAACGCATT TAAAACGAAC AGCATTCAGT TTCCACATCA AGATATATTT
ATTAAACCTT TTCCTTCCAA TGAAAAATCA TCTGATAGCT AG
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| Protein sequence | MNRFLLIVAV QFLMIAASGQ TLSAKPDTAL QEELLYQKSL IKDEAGKRAE QFNEDKLVLN
QELALEKVLQ AARIAKQYLK SDMDTAAWQI QIDDIQKKYI IAGDGVFSNK GTIQTHRNLT
VTSKILWELL NELNARKVKI NIYKHKLVDC RNDIDSLSSA PALFIVSEDS VRLRGHLQRL
SVISREVRPV NNALEQSINR LQKLKEQIDY TVFEIMAALD HIEQSEIELS SRSFEKEMNY
LWEPSIPERP FHEIIYQSLE KDSLTLKYYA ANNSGRVILL LIFISMSVYF ISSLKRKAQN
EHLIRSDFSD QLVIKYPLLS ALMIVINIFQ FIFPNPPFIF NCLLWVVSTF CLTIIYMNYI
TKYWMCFWLL MWMLFLLACG NNLILQASMT ERWIMLAIAS AGLSLAAFIA SKKRREELRE
KSTVYFIIFI IIIETASIAA NMYGRFNISK SLLTSGFINL IIAISFLWTV RLINEGLSLA
SRMFRTPERR LFYINFSVIG HKAPFFLYAL LVIGWFIVFA RNFYEFNFVT QPVTDFIHSE
IHIGNYSFSI YSVALFIVIL LVAAIVSKII SFFGADISAS AADNRRPTLG SWILLIRITI
IVTGLLVAFA AAGIPLDKAT FVLGALGVGI GFGLQSLVQN LVSGIILTFE KPVNVGDFVE
IKGQKGTIKS IGFRSSTLLT IEGSKVIIPN GEILNDNVTN WTHERGMNRR TQIVIGVAYG
TDLESARKIL LDLVADQDSI LKNPTPFVLI SDFDSSSIRL QLFFWTSTPF AGNFVKSELI
IAIQNAFKTN SIQFPHQDIF IKPFPSNEKS SDS
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