Gene CHU_2688 details

Gene Information

• Locus tag: CHU_2688
• Symbol: typA
• ID: 4186752
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: -
• Start bp: 3071992
• End bp: 3073800
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638072680
• Product: GTP-binding elongation factor
• Protein accession: YP_679282
• Protein GI: 110639073
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.624164
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAGAGTA TCAGGAATAT TGCGATCATC GCACACGTCG ATCACGGTAA AACAACATTG 
GTTGATAAAA TCATTCACGC GTCTAAAATC TTCAGAGAGA ACCAAGTATT CGAAGACTTG 
ATCTTGGATA ACAACGATCA GGAACGTGAA CGAGGCATTA CAATTCTAGC TAAAAACGTT 
TCTATTCGTT ATAAAGAACA TAAAATTAAC ATTATCGATA CACCAGGTCA CGCCGATTTC 
GGTGGTGAAG TGGAGCGTGT ATTGAAAATG GCTGATGGTG TAGTGCTATT GGTAGATGCA 
TTTGAAGGCG CTATGCCTCA AACGCGTTTC GTATTGAGCA AGGCATTGGG CTTGGGCTTA 
AAACCGATCC TGATCGTAAA CAAAGTAGAT AAAGAAAACT GCCGTCCGGA CGAAGTACAC 
GAAGAAGTAT TCGACTTAAT GTTCAACTTA GGTGCAAACG AGCATCAGCT TGATTTCGTT 
ACACTTTACG GTTCTGGCCG TGGTGGCTGG ATGAGCACAG ACTGGAAAAA GAAAACAGAA 
GATATCATTC CTTTGCTGGA TGCAATCGTG GATCACATTC CACCTGCACC GGTGCATGAA 
GGTATTCCTC AAATGCAGAT CACTTCATTG GATTACTCTA CATTCACAGG CCGTATCGCA 
ATCGGTCGTG TATTCAGAGG CGAATTAAAA GAAGGCGGAC AGTATTCATT AACTAAAATG 
GATGGTTCGA TCAAAAAAGT AAAAATCAAA GAACTTCACT CGTTCGAAGG TTTAGGCAGA 
GTACGTGTTG AAAGCGTTTT AGCTGGTGAT ATCTGTGCCG TAGTTGGTAT TGAAGATTTC 
GAAATCGGTG ATACAATCAC AGATCTTGAA AAACCGGAAG CGTTACCACG TATCGCTGTT 
GATGAGCCTA CCATGAGTAT GCTTTTCACA ATCAACAACT CTCCGTTCTT CGGTAAAGAA 
GGTAAGTTTG TAACTTCCCG TCACCTGAGA GATCGTTTGA TGAAAGAGTT AGAGAAAAAC 
CTTGCTTTAC GTATTCAACC AGGTGAGTCT GAAGATAAAT TCTTAGTATT CGGCCGTGGT 
ATTCTTCACT TGTCTGTATT GATCGAGACA ATGAGAAGAG AAGGATATGA ATTACAAGTG 
GGTCAGCCGC AAGTATTGTA TAAAGAAATT GATGGCAAAC GTTGCGAACC GGTAGAAGTA 
CTGGTAGTGG ATGTACCTCA GGAAACTTCC GGTAAAGTAA TTGAATTGGC TACGCAGCGT 
AAAGGTGAGT TGCTGATCAT GGAACCAAAA GGTGACTTAC AACACTTAGA ATTTAAAATA 
CCTTCCCGTG GTATCATCGG TTTACGTACA AACGTGTTGA CGGCAACATT CGGTGAAGCA 
ATTATGACAC ACCGTTTCGA CGGATACGAG CCTTATAAAG GTGCTATCCC TGAACGTGTG 
AGTGGTTCTA TCATCTCTAT GGATAGCGGT GATGTTACTG CATACGCATT GGATAAATTA 
CAGGACAGAG GTAAGTTCTT CATCGAACCG GGTGATGTTA TTTACCAGGG TATGGTTATC 
GGTGAGCACA ACCGTCAGAA CGATATCACG GTAAACGTAC AGCGCGAAAA GAAATTGACC 
AACATGCGTG CATCCGGTAC AGATGATAAC GCTAAGATCG CTCCGAAGAT TAACTTCTCA 
TTAGAAGAGA TGATGGAATA CATCCAGAAG GATGAATACA TCGAGGTTAC GCCTAAGTCT 
TTACGTATGC GTAAGATCCT TCTTGACGAG AACGAGCGTT TGAGAAACAC GAAAAAAGAA 
GCTGTTTAG 

 

Protein sequence

MQSIRNIAII AHVDHGKTTL VDKIIHASKI FRENQVFEDL ILDNNDQERE RGITILAKNV 
SIRYKEHKIN IIDTPGHADF GGEVERVLKM ADGVVLLVDA FEGAMPQTRF VLSKALGLGL 
KPILIVNKVD KENCRPDEVH EEVFDLMFNL GANEHQLDFV TLYGSGRGGW MSTDWKKKTE 
DIIPLLDAIV DHIPPAPVHE GIPQMQITSL DYSTFTGRIA IGRVFRGELK EGGQYSLTKM 
DGSIKKVKIK ELHSFEGLGR VRVESVLAGD ICAVVGIEDF EIGDTITDLE KPEALPRIAV 
DEPTMSMLFT INNSPFFGKE GKFVTSRHLR DRLMKELEKN LALRIQPGES EDKFLVFGRG 
ILHLSVLIET MRREGYELQV GQPQVLYKEI DGKRCEPVEV LVVDVPQETS GKVIELATQR 
KGELLIMEPK GDLQHLEFKI PSRGIIGLRT NVLTATFGEA IMTHRFDGYE PYKGAIPERV 
SGSIISMDSG DVTAYALDKL QDRGKFFIEP GDVIYQGMVI GEHNRQNDIT VNVQREKKLT 
NMRASGTDDN AKIAPKINFS LEEMMEYIQK DEYIEVTPKS LRMRKILLDE NERLRNTKKE 
AV