| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2556 |
|---|
| Symbol | |
|---|
| ID | 4186624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 2936834 |
|---|
| End bp | 2937427 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638072548 |
|---|
| Product | pentapeptide repeat-containing protein |
|---|
| Protein accession | YP_679151 |
|---|
| Protein GI | 110638942 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0339255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATT CCGGAGAACA CATCGTACAT CAGCAAAAAA CATTTACCAA CGTCAACTAT
TCCGGTAAGG TACTACGCGA TAGGGAATTT ATCTCGTGCA CGTTTATTGG CTGTGACTTC
AGTAAAAGTG ATTTACGTGA TAACGATTTT GAAGGATGTC ATTTCAATCA ATGTAATTTT
TCAATGTCCA TTATTGAAGG TACCGGTTTC AGAGATGCTG CGTTTACAGG ATGTAAAATT
CAGGGTGTTG ATTTCACGCG CTGCAACCGG TTTATGTTTT CTTTTACCTT TAAGGATAGC
CACATTGATT ACTGCACATT TTTTGGAACA AAATTACGGA AGACAAACTT TCTGAATTGT
ACGTTAAAAG AAACAGACTT TTCTGAAGCA GACTTAACAT CTGCCGTATT TGAAAATTGT
GATCTTTCAG AAACACGTTT TTTAAATACC ATCCTTGAAA AAACAGATTT CAGAACGGCT
CAACATTTTT CGATTGACCC GGATTCCAAT AAAATGAAAA AAGCAAAGTT CCATGCGATG
AACCTTGCCG GCCTCCTATC AAAGCATCAA CTGGATATCG AATACAGCGG TTAG
|
|---|
| Protein sequence | MSHSGEHIVH QQKTFTNVNY SGKVLRDREF ISCTFIGCDF SKSDLRDNDF EGCHFNQCNF
SMSIIEGTGF RDAAFTGCKI QGVDFTRCNR FMFSFTFKDS HIDYCTFFGT KLRKTNFLNC
TLKETDFSEA DLTSAVFENC DLSETRFLNT ILEKTDFRTA QHFSIDPDSN KMKKAKFHAM
NLAGLLSKHQ LDIEYSG
|
|---|
| |