| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2030 |
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| Symbol | trmE |
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| ID | 4184555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 2363169 |
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| End bp | 2364551 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638072033 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_678638 |
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| Protein GI | 110638429 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.312338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAGTACAA CAACTGTAAC TAACCACACC GATACGATTG TAGCCTTAGC GAGTCCGCAA
GGTATAGGCG CTATCGGCGT GATTCGTTTA TCAGGGCCTC AGGCTTTTGA TATTACTTCT
TCTGTCTTTC CATCCAAAAA CATTGCGGCT GTTCCGACAC ATACGGTACA CGTAGGTAAT
ATTGAAGACG AAGGCCGTAT CCTGGATGAA GTTGTTGTTA CGGTATTTAA AGGGCCAAAA
TCATTCACCA AAGAAGACGT GGTTGAAATC TCATGCCACG GTTCAACCTT TATTGTAAAA
GAACTCCTGC AGCTGTTGTT GCGCAAAGGG GCGCGTCATG CCAAACCGGG CGAATTCACT
ATGCGTGCGT TCTTAAACGG ACGGTTTGAC CTGGCACAGG CCGAAGCAGT GGCCGATTTA
ATTTCCTCCG ATTCGCATGC ATCGCATCAG GTTGCTTTAC AGCAGATGCG GGGAGGCTTC
TCCGATGAGA TCAGAAAACT GCGCGAACAG CTGATCCATT TTGCTTCCAT GGTAGAACTG
GAACTGGATT TCAGCGAAGA AGATGTAGAG TTTGCCGACC GTACGCAGTT ACGCAAGCTC
ATTCACGAAA TCAAACGGGT AATCGACCGC CTGATTCATT CTTTCTCGTT GGGTAATGTA
ATCAAGAATG GTGTACCAAC GGTGATCATT GGCAAACCCA ACGCCGGTAA GTCTACTTTA
CTCAATACGC TGTTAAACGA AGAGAAGGCG ATCGTATCGG AGATAGCCGG TACCACGCGC
GATTTCATTG AAGACGAACT GAACGTGGAA GGTATTACCT TCCGCTTTAT CGATACCGCG
GGCTTACGCG AAGCAACCGA TGCCATTGAG GCTATGGGTG TGAAGCGTAC GCGCGAAAAA
ATGACACAGG CAAGTTTAGT GATCTATCTG TTTGATGTGA AGTCTACCTC CGAGCGCGAA
CTGATCCGCG ACCTGGAAGA ATTGAAAGCA TTGAAAGCAC CATTTTTAGT CGTCGGCAAT
AAGATTGACA AACGCGAAGA CGCGATCATT ACAACCTTCC GCAACATCGA CGGTATTATT
TATATCTCTG CCAAACAGAA CATCGGTATT GAAGAACTGA AACAGAATCT GTTGGAAATT
ATTCAATACG AATCCTTCAA ACAGAACGAT ACGCTGGTTA CCAACATGCG CCATTATGAG
AGTCTGCGCG AAACACGCAA GGCCTTAGAC GAAGTGCTTA CCGGCATGGA CAGTCAGGTA
CCCGGCGATC TGCTTGCACA GGACATTCGT CAGTCCTTGT TTCATTTAGG TGAAATCACG
GGTGATATTT CTACGGATGA TCTGCTGGAT AATATTTTCA GCAAGTTCTG TATCGGAAAG
TGA
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| Protein sequence | MSTTTVTNHT DTIVALASPQ GIGAIGVIRL SGPQAFDITS SVFPSKNIAA VPTHTVHVGN
IEDEGRILDE VVVTVFKGPK SFTKEDVVEI SCHGSTFIVK ELLQLLLRKG ARHAKPGEFT
MRAFLNGRFD LAQAEAVADL ISSDSHASHQ VALQQMRGGF SDEIRKLREQ LIHFASMVEL
ELDFSEEDVE FADRTQLRKL IHEIKRVIDR LIHSFSLGNV IKNGVPTVII GKPNAGKSTL
LNTLLNEEKA IVSEIAGTTR DFIEDELNVE GITFRFIDTA GLREATDAIE AMGVKRTREK
MTQASLVIYL FDVKSTSERE LIRDLEELKA LKAPFLVVGN KIDKREDAII TTFRNIDGII
YISAKQNIGI EELKQNLLEI IQYESFKQND TLVTNMRHYE SLRETRKALD EVLTGMDSQV
PGDLLAQDIR QSLFHLGEIT GDISTDDLLD NIFSKFCIGK
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