Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1811 |
Symbol | mhpC |
ID | 4185037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2126087 |
End bp | 2126878 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638071810 |
Product | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase |
Protein accession | YP_678420 |
Protein GI | 110638211 |
COG category | [R] General function prediction only |
COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.00537081 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATATTCA AGAACAATAA ATCAGAAAAA CGTCAGATTT TTAACTTCCA TGAAAAAGGA GAAGGCGAAA CAATTATTTT CCTGCACGGA TTGTTTGGTG AGCTTAGCAA CTGGAAAGCA ACGATCGATC ATTTCAGTAA GAGCTATCGC GTTGTTGTAC CTATTATGCC GATCTATGAT GGCACCATGC AAAAAGATGG TCTGGATGGT TTGGTAACGT ATCTTCATGA ATTGGTTACA GAATTAAAAA TAGAGCGTTT CAATCTGGTT GGAAATTCTT TAGGCGGACA GGTAGCAATT TTGTATTCTG TTGCGTATCC TGAAAAGGTG ATCCGTTTGG TGTTAACGGG CAGCGCTGGT TTATATGAAA GCACTATGGG GGCAAGTTAT CCGAAACGTG GTGACTATGC TTATATCGAA GACCGTGTAC GTTATACATT CCACAACGAC AATATTGTTA CTAAAAATCT GGTTGATCAG GTCTTTGAAA CAGTAAACGA TATACGCAAA TCGATTCGTG TTATTAAAAT CGTGCGTGCT GCAAACGGGA ATAATGTTGC AGATGCGTTA AAACAGATAA CTACTCCAAC GTTACTTGTA TGGGGCAGAC AGGACAGGAT TACACCGCTT GAGATTGCTT ATAAATTTAA AAAATTACTT TCCGGAAACA CCGAGCTTCG TATCATTGAA GAATGCGGGC ACGCACCTAT GATGGAGCGT CCGGAGCAGT TTAACGAAGC ATTGGAAAGT TATTTTAACA CCGAAACATT TGCATACGCA AACGTAGGTT AA
|
Protein sequence | MIFKNNKSEK RQIFNFHEKG EGETIIFLHG LFGELSNWKA TIDHFSKSYR VVVPIMPIYD GTMQKDGLDG LVTYLHELVT ELKIERFNLV GNSLGGQVAI LYSVAYPEKV IRLVLTGSAG LYESTMGASY PKRGDYAYIE DRVRYTFHND NIVTKNLVDQ VFETVNDIRK SIRVIKIVRA ANGNNVADAL KQITTPTLLV WGRQDRITPL EIAYKFKKLL SGNTELRIIE ECGHAPMMER PEQFNEALES YFNTETFAYA NVG
|
| |