Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1796 |
Symbol | ompA |
ID | 4184692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2105831 |
End bp | 2108542 |
Gene Length | 2712 bp |
Protein Length | 903 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638071795 |
Product | outer membrane protein 3a |
Protein accession | YP_678405 |
Protein GI | 110638196 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.446296 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAGT TACGTTTAAT CATATCGATT TTAATTCTTG TAGTTTTTTC TGCAACGACT TCTTATGCTC AACAAAAAAA GAAGCATATG AGTACGGGTA AAATTCATGC GTCTCAACAA AAAGGCGATG AACATTTCTC CAGATACGAA TATTATTTAG CGGCACAGGA ATATAAAATT GTTGTAGATG AAGAACCTTC TAATTATTAC GCTGTATTTA AATTAGCGGA ATCTTACCGC GAATATTTTG ATTATGCATC CGCTGAAAAA TATTATAAGA TTATTATTGC CAAAGATCTT CCTGAATATC CATTAGCCCG TTTCTGGTAT GCTATTACGT TACGGGATAA TGGGAATTAC TCTGGTGCTA AAACTAATTT TCAGCAATTT TTAAATGAAT ATAAAGAAAC ATCTTTATCC GCAGAAGAAT ATAAAGACCG TGCACGTAGT GCGGTAGATG GTCTGGAACT GGCAGAAGCT GAAATGAAAT TACCACAGCG TGATTATACC TTTCATTGTT TGCCGGAACC GCTTAATACA AAATATTCAG AATATTCACC GGTTATTGTG GGTGAAACCG ATTCGATTGT TGCCTTTACG TCTTCAAGAG AAGGATCTAT GGGAAACGTG GCCAATGCTA TGTTAGGTGG ATCAACAAGT GATAACTACC GCTATGTTTT TGATGGGAAG TCTGCCTGGA TTCCGTATGT GCCGGTACCT GATGATAATT TTGCTTTAGC GAATTCTATT TACAATGAAA GTCCCGGGTC ATTTACCAAA GATGGTAAAA AGTTTTATTT CACCCGCTGC GATGAAAAAT TAGTGATCGG TAAATACGAA GAATATAACT GTGTAATCTA TGTAATGAAA AAAGATGCTG CCGGTATGTG GACAGCACCT GTCCGTTTAA ATGAAAATAT TAATATGAAA GGCCAATGGA ATAGCCAGCC TTCTATATCT CCGGATGGGA AAATTTTATT CTTTACTTCT AAAAGACCCG GAGGAATTGG CATGCATGAT ATCTGGTTTT CAACCTGTAC AAAGGATGAT AACTGGGGAC CGCCTTCAAA CCTGGGACAA GGTGTAAATA CCATATTCAC AGATATGTCG CCGAGATATT ATGCCGAAGA CCGTTTGCTA TACTTTGCTT CGAATGGACA TAATGGCTTT GGTGGTCTGG ATATTTTTGT AGCGAAAGAA TCAGAAAATT TTGAAACATC TACAAACATC GGGATGCCGT TTAATTCACA CCGCGATGAT TTCTATTTTG TCTTGGGGAA CAAATTCGGT TATCTTTCAT CAAACAGACA GGGTGGTGTA GGAAACGATG ATATTTACCG GTTTAATATC ATTCCTAAAG AAGAAGCAGT ACTTACCAAA ATTAACGCAG ATTCTATTCC GGCAACCGTT AAAAGTATTT CAGTTGTAGG TAAGGTAGTT GATGACAAAG GGCACAAAGC ATCTAATGTT GAAGTAGCTT TAACAGATGC GAATGATGTT AAATTAAAAG TTACCAAAAC CAACGACGAA GGTGTATTCC GGTTTGACAA TCTGGCTACA GGGAATTACA GGGTTGTATT GATTGAAAAA GATTCAAAGG TAACGCAAAA GATCTCCTAT AAAGTTGATA CCATCATTAT TCAGTCGTCA ACGATTGCAG CTAACCGGAA ATTATTTGAG AACATCTATT TTGATTTTAA TCAGTCTGAT TTACGTCCGG AAGCTAAAAA GACACTGGAC GAATTGGCCG CTTATTCAAA TAAAAATCCT CAGATACAAA TTGAGCTGAA TGCTAATACC GATGGGTTGG GAACGGATAC ATACAATAGG GCTTTATCTG AAAAACGCGG GCAGGCAGCT ATTGATTATT TGATTGGCAA GGGCGTGGAT CATTCGCGTA TTGTTATGAA TCCGCTGGGT AAAGAGCGAC CGCTTACATC CAACGATAAT GAGGTCGGAC GACAATTAAA CAGACGTGTT GAATTTTATA TTCTGGGCGG TCCGAATTAT GAAACAAAGA ACATGGCTTA TGTAGTTGAG CCGAAAGCTA CGTTGTATTC CATTGCACAG AAATTCAACA TGACGGTTGA AGAAATCCGT GAAATTAATG CACTGTCTTC CGATGACGTG ATTCCCTTTA CACCTTTACG AGTGAAGCGT AATGTAGGTG ATAACGATAT CATTGCACAG GTATCAATGA CCGAATCAAT GACAACAACC GATCAGAAGA AGAACAAAAA GTATTATAAT AAACTGGCAG AAAAGAATGC CGGCATAGAT GCATCCATGT CGTATAATAA TATTGATATT GCTGAGAAGA ATGAGATCAT TGCATCTAAA AATTCAGAGA TTACTAAAAA CCTGGCACTG AAAAAAGCAC AGCAGGTATC GTTGAAAGAG GGGGAAGACC TATATAAAGT TCAGCCTAAA AACACCTTGT TCTCTATTGG TAAATTGTAT AAAATGTCCG TTGATGACAT CAAAACATTA AATAATTTTA AATATGATAC AATTTATGTA AATCAGCTGA TAAAAGTTAA AACAGGTATT TATAAGCCTG CAGCAAATGA GTATTTAGTT AAAGAAGGAG ATACCCTTGA AAATATTGCT TACACCCACA ACGTAACCGT AGAGCAGATT ATGGCACTCA ACCCGATTGA TGGATATGTA TTGCAGCGCA ACATGATCTT ACGCTTACGC AAAGACGAAT AG
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Protein sequence | MNKLRLIISI LILVVFSATT SYAQQKKKHM STGKIHASQQ KGDEHFSRYE YYLAAQEYKI VVDEEPSNYY AVFKLAESYR EYFDYASAEK YYKIIIAKDL PEYPLARFWY AITLRDNGNY SGAKTNFQQF LNEYKETSLS AEEYKDRARS AVDGLELAEA EMKLPQRDYT FHCLPEPLNT KYSEYSPVIV GETDSIVAFT SSREGSMGNV ANAMLGGSTS DNYRYVFDGK SAWIPYVPVP DDNFALANSI YNESPGSFTK DGKKFYFTRC DEKLVIGKYE EYNCVIYVMK KDAAGMWTAP VRLNENINMK GQWNSQPSIS PDGKILFFTS KRPGGIGMHD IWFSTCTKDD NWGPPSNLGQ GVNTIFTDMS PRYYAEDRLL YFASNGHNGF GGLDIFVAKE SENFETSTNI GMPFNSHRDD FYFVLGNKFG YLSSNRQGGV GNDDIYRFNI IPKEEAVLTK INADSIPATV KSISVVGKVV DDKGHKASNV EVALTDANDV KLKVTKTNDE GVFRFDNLAT GNYRVVLIEK DSKVTQKISY KVDTIIIQSS TIAANRKLFE NIYFDFNQSD LRPEAKKTLD ELAAYSNKNP QIQIELNANT DGLGTDTYNR ALSEKRGQAA IDYLIGKGVD HSRIVMNPLG KERPLTSNDN EVGRQLNRRV EFYILGGPNY ETKNMAYVVE PKATLYSIAQ KFNMTVEEIR EINALSSDDV IPFTPLRVKR NVGDNDIIAQ VSMTESMTTT DQKKNKKYYN KLAEKNAGID ASMSYNNIDI AEKNEIIASK NSEITKNLAL KKAQQVSLKE GEDLYKVQPK NTLFSIGKLY KMSVDDIKTL NNFKYDTIYV NQLIKVKTGI YKPAANEYLV KEGDTLENIA YTHNVTVEQI MALNPIDGYV LQRNMILRLR KDE
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