Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1628 |
Symbol | ksgA |
ID | 4187005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1905488 |
End bp | 1906264 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638071621 |
Product | dimethyladenosine transferase |
Protein accession | YP_678238 |
Protein GI | 110638030 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0030] Dimethyladenosine transferase (rRNA methylation) |
TIGRFAM ID | [TIGR00755] dimethyladenosine transferase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0961527 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00711372 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAAAGG TAAAAGCAAA AAAACATTTA GGACAGCATT TTTTGAATGA TCAGCAAATC GCACAGGATA TTGTTGATGG CCTTACATTG CATGGTTCGT ATAAAGAAGT TCTGGAGATA GGGCCGGGTA TGGGTGTGCT TACACAATAC CTGCTTAAAA ATAATTCCTA TCATACCAAA GTTGTTGATA TCGATGGGGA ATCAATCGAA TATTTAAAAA AAGTATTTCC TCAGTTAAAG GATGATGTTA TTCATGGCGA TTTTTTAAAA GCAGATCTTG CCGATTGGTA TCCCGATAAA TTTGCTATCA TAGGAAATTT TCCGTACAAT ATTTCAACAG AGATTTTATT TAAAGTGCTC GATTACAGAG AACAGATTCC GGAGGTTGTA GGCATGTTTC AGAAAGAAGT TGCCGAACGG TTTGCTGCTA AGAATGGGAA TAAAACATAC GGCATTACCA GCGTGTTGCT GCAGGCATTT TATGACATAG AATATTTGTT TACCGTACCG GAACATGTTT TCACACCGCC GCCTAAAGTG AAGTCGGGTG TGATTCGCTT AAAGAGAAAT AACCGCACAC ATTTGCCCTG CGATGAAAAA GAATTTTTCA AAGTTGTAAA AGCAGGCTTT AACATGCGGC GTAAGACATT AAGAAATGCG CTCAAATCAA TCAACGTGCA AAACATTTCT ATGGATTTAC CTATCTTTGA TAAAAGAGCA GAACAACTAT CTGTTCAGGA ATTCTTCGAT TTAACTAACA TGCTTTCCGG AAAATAA
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Protein sequence | MEKVKAKKHL GQHFLNDQQI AQDIVDGLTL HGSYKEVLEI GPGMGVLTQY LLKNNSYHTK VVDIDGESIE YLKKVFPQLK DDVIHGDFLK ADLADWYPDK FAIIGNFPYN ISTEILFKVL DYREQIPEVV GMFQKEVAER FAAKNGNKTY GITSVLLQAF YDIEYLFTVP EHVFTPPPKV KSGVIRLKRN NRTHLPCDEK EFFKVVKAGF NMRRKTLRNA LKSINVQNIS MDLPIFDKRA EQLSVQEFFD LTNMLSGK
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