| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1538 |
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| Symbol | |
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| ID | 4184516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 1792019 |
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| End bp | 1795057 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638071532 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_678149 |
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| Protein GI | 110637942 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0101738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.837321 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAAA AAAGTATTTT ACTGTTCTTT GCATGCATCA ATGTTTTTAT TGCATTTGCT
CAGAATACAG CTGCACATAA TGCTTCAGAT CGAACGTATT ATGATGGCAT GGAACTCTTT
GATAAGCAAA AATATGTTGC TGCCAGAGAA TTGTTCCGCC AGTATATTCA ATCTGCCCCA
CAGGAAACCA GAGCCATTGA ATGTGAATAT TATATAGGCC TGTGCGCCTT GAATTTGTTT
AACGACGATG CAGAGTATCT GTTAAATAAT TTCGTTGAAA AATATCCCAA TCATATTAAA
TCGGGCAGAG CCGGTTTTGA CTTAGGAAAT TTTTTTTATA CCAATAAATC ATACGATAAG
GCCATTCTAT ACTATGCTAA AGTAGATGAA TCAAAACTTT CTCACGAAGA ATTAAATAAC
TACTATTTTA AGTCGGGTTA TTCAAGCTTT ACCAAAAAAG ATTTTGCTAC AGCACTGGAT
AAATTTAATA AATGTAAAGG TGCCAAACAT CAGTACACAC CTGCTGCAAA TTATTATGCC
GGCTATATAG AATTTAAAAA TGGTGAATAC GATACGGCAA TAGCTGATTT GCAGAAAGCA
GCGGAAAGTA AGGAGTATAA GCCTTTAGTA GCCGTATTGA TTGCTAATAT CTATTACAGA
CAGGCGAAGT ATGATGAACT GATCCCGTAT GCGGAAAAAG TAATTGCAGA TAAATCAGCC
GGTCCTAATA CCAATGATGT GAAGCTGATC CTGGCAGATG CCTATTTTTT CAAACAGGAA
TATGCTAAAG CAACACCTTT ATTTAAGGAT TATTTAACGG CGACAGGTAC AAAGAGCCTT
ACACCGGATA TGAAATACCG GATCGGATTC TCCTCATACA AAGCAGCAGA TTATAAACAG
GCCGTAGATA TGCTTCAGGC AATTGCTACC GATAAAGATT CTCTCGGACA GTCATCTGCT
TATATATTGG GTTTGAGTTA TTTAAAATCA GAAAACAAAA ACGCTGCGCT GATCAGTTTT
GAACTGGCAC AGCGTTCTGT ATTCAGTGCC GTAATAAATG AAGAAGCAAT GTTTTTGTAT
GCAAAGATAA CATCTGATTT AGGGCGTTTT ACTGAAGCAA CACCACGTTT AAAGAATTTT
ATTGAAAAAT ATCCGAAGAG TTACCACATG CAGGAAGCAT ATGAATTGCT GAGTGAATCA
TTTTTAGGTT CCCGCAATTA TGATGAAGCC TTAGTATATA TCGAAAATTT AAAACATCAG
AACTCCCGCA TTCACACTAC GTACCAGCGT ATTGCTTATT ACAAAGCCGT TGAACTGATT
AATAAAAAAC AGTATGCTGC CGCTATTGTT GCACTGGATA AGTCTTCTAC CTATAATTTT
GACAAGACGG TATACATCAA TTCGTTTTAC TGGAAAGGCG AATGTCTTTC GTTGGAAAAA
AGATACCCGG AAGCCATTGA GTCATATTCA ACGGCTATTG AAAAAGGCAA TACGCTTGAA
AATACCAATG TTGCAAAAGC CTATTACGGA CAGGGCTATG CATATTATTA CCAGAAGAAA
TGGGACGAAG CCATTCCGCA GTTTGTAAAA TTCATTACCA TACAGGCAGA GAAAAAAGGC
AAAGGAGATA TTTATTACCG CGATGCTGAA TTACGTTTGG CTGACCTGTA TTTTGTAACC
AGACGTTTTC CTGAAGCAAT AAAATATTAT GACTTTGCAC TTGCTGAACG GAATGAAGAT
GAAGATTATA TTCTTTTTCA GAAAGCAACA ATCAATTACT TAACCAATAA AACGTCGCAG
GCATATTCCA TGTATGCGCA GCTGACAAAT AAATATCCGA ATTCTGCATA TTACGATCAG
GCATTGATGC AACGTTGTCA GCTGGATCTG GAAGCCAGTA AGTACGAAGT AGCTATTGAA
GGCTACAATA AGATTATCAA TAAAAAAGAA GATCTGAACG GACTTAAACC AATTGCCTTA
CAGAAGCGTG CGATTTCCTA TTTCAATTTA AAAGATTATA ACAAAGCGAT TGCCGATAAT
AAGCGCATCG TGTATGAATA CCCTAAAAGC GCTCCGGCTT ACAGTGCGTT ATTAAGTATT
CAGGAGATGC TGGGCATTCA GGATAAATCA GAAGAGTTTG CACCAATTCT TGCAAAGTAT
AAAGAATTAA ATCCAAGTGA TCAGGATCTG AAAGAAGTAG AATTCAGAAG TGCACAATCG
TTGTACAGTT CTCAGAAATA TCCGCAGGCG ATTACAGGTT TTGCTGCCTT TATCCGTCAG
TATCCGACAC ACCCGAATGT TAGTGAAGCA CAGTATTACC TGGCAGATTC GTATTTCAGA
ACAAAAGATT ACAGCAACGC GAAGGCAACA TACATTGAGA TTCTGGCAGA AAAAAATCAA
TATTATAAAA AATCGCTGCA GCGTGTGGCA GATATTGCTT ACCTGCAAAA CGACCTGCCG
GGTTCATTAA AATATTATTC CGAATTCCAG TCGCTGGCAT CAAGCAATAA AGAAAAAACC
GCAGCCTGGA CAGGTTTAAT GGTTGCGTTT TTTGATTCCA ATCAATTAGA CTCCTGCATG
GCATATGCTA CGCGCATTAT AAGCCATGGT TCGGCAGCGC CGGATGCAGA AAATAAAGCA
CAGCTTTATA AAGGAAAAGT ATCCTATCAG AAAAAAGAGT ATGATGCTGC CCAGGATTAT
TTATTGTCTT GCATAAACGG ACCTAAAGAT ATCAGTGCCG CGGAAGCAAT GTATTACGTA
GCCAAAATCC AGTTCGATAA AAAGCAATAT GCTCAATCAA TGGAAACGCT GTATGATTTC
AATAATACAT TCAACAGTTA CGAAACATTG CTTGGTAAAT CGTATTTATT GATCGCAGAA
AATCTTGTTA TGAAGAATGA GATTTTCCAG GCGAAAGAAA CCTTGAACTC AATCATTTTG
AAATTCCCGA ACGCAGATAT TAAAAAGCAG GCTCAGGCAC GTTTGGATCA ATTAAATGCT
ACAGATGCTA AAACAAAGGA GGGTGCAGGA AATGAATAA
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| Protein sequence | MVKKSILLFF ACINVFIAFA QNTAAHNASD RTYYDGMELF DKQKYVAARE LFRQYIQSAP
QETRAIECEY YIGLCALNLF NDDAEYLLNN FVEKYPNHIK SGRAGFDLGN FFYTNKSYDK
AILYYAKVDE SKLSHEELNN YYFKSGYSSF TKKDFATALD KFNKCKGAKH QYTPAANYYA
GYIEFKNGEY DTAIADLQKA AESKEYKPLV AVLIANIYYR QAKYDELIPY AEKVIADKSA
GPNTNDVKLI LADAYFFKQE YAKATPLFKD YLTATGTKSL TPDMKYRIGF SSYKAADYKQ
AVDMLQAIAT DKDSLGQSSA YILGLSYLKS ENKNAALISF ELAQRSVFSA VINEEAMFLY
AKITSDLGRF TEATPRLKNF IEKYPKSYHM QEAYELLSES FLGSRNYDEA LVYIENLKHQ
NSRIHTTYQR IAYYKAVELI NKKQYAAAIV ALDKSSTYNF DKTVYINSFY WKGECLSLEK
RYPEAIESYS TAIEKGNTLE NTNVAKAYYG QGYAYYYQKK WDEAIPQFVK FITIQAEKKG
KGDIYYRDAE LRLADLYFVT RRFPEAIKYY DFALAERNED EDYILFQKAT INYLTNKTSQ
AYSMYAQLTN KYPNSAYYDQ ALMQRCQLDL EASKYEVAIE GYNKIINKKE DLNGLKPIAL
QKRAISYFNL KDYNKAIADN KRIVYEYPKS APAYSALLSI QEMLGIQDKS EEFAPILAKY
KELNPSDQDL KEVEFRSAQS LYSSQKYPQA ITGFAAFIRQ YPTHPNVSEA QYYLADSYFR
TKDYSNAKAT YIEILAEKNQ YYKKSLQRVA DIAYLQNDLP GSLKYYSEFQ SLASSNKEKT
AAWTGLMVAF FDSNQLDSCM AYATRIISHG SAAPDAENKA QLYKGKVSYQ KKEYDAAQDY
LLSCINGPKD ISAAEAMYYV AKIQFDKKQY AQSMETLYDF NNTFNSYETL LGKSYLLIAE
NLVMKNEIFQ AKETLNSIIL KFPNADIKKQ AQARLDQLNA TDAKTKEGAG NE
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