| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1462 |
|---|
| Symbol | |
|---|
| ID | 4184018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 1697354 |
|---|
| End bp | 1698562 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638071455 |
|---|
| Product | Tn5520-like integrase (transfer factor) |
|---|
| Protein accession | YP_678073 |
|---|
| Protein GI | 110637866 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.174557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0965208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCTG TAAAAGTATT TTTAGCTAAA AATAAGCAGC TTAAAAATGG AGAATATCCG
GTATGGATTC GGATAATAAT TGATAGAAAA ACTAAATACA GTTCTTTAGG AATAAGTACA
AAGTTAGAAT GGTGGGATGA GAATAAATGT ATTCCCAATA AAAAGAACCC TAATAAATTT
GAGTTAGAAA CACTCATCAG CAAAAAGATT GCTGAAGTAA AGAAGGCAAT TATGGAGTCT
GAAATTGAAA ACAAAAGTTA TTCAGCAGAC GAAATTATTG CCACAACAAA AAAGAGTAAA
AATAAAATAA CAGTTCTTAA ATTTTATGAT GAAGTAATTG AACGTTTCAA AAAAGCTAAT
AAAATTGGAA ATGCAGCTGT GTATAGAGAT TCAAGAAAGG CATTATTCAA ATTTAGAAAA
GGAAAAGATT TATTCTTTCA TGAGCTTGAT CCTGGCATGT TAAACAAATT AGAAGAATAT
TTATTGGGTA ATGATGTTAG TGAAAACTCC ATAAGTGTCT ATATAAGGAC ATTGCGTTCA
TTATATAATA AAGCTATAAT AGAAGGCTAT GTGAAAAAAG ATTGCTACCC TTTCGATGTA
TATAAGATTA GTAAGCTAGA TACTAAAACT AAAAAAAGAG CTATTACAAA AGATTTAATG
CAACGTATCA TTGACTTGAA AATTGATGAA GATACAAATG AATGGCATAG TAAAAATTAT
TTTTTATTTA GTTACTATAA CATGGGTATG AACATTTCAG ATATTGCTAT TCTGAAAAAT
GCCAACATTG AAAACGGAAG ATTGAAGTTT AAAAGAATGA AAACAGGTAA GGAATATAAT
ATTAAACTGC TAAAACCTGC AATAGAAATT TTGAATTATT ATTTGGAACA TCAACTATCA
AAATATATTT TCCCAATTCT TAACGATAAA GTTCACATAA ACCAAAACCA AATACATAAT
AGAATAAAGA AGGTGACAAA GCAAATTAAT TCAGGATTGA AGGTAATTGC TAAGTCATGC
GACATAGATG TTAAATTAAC CACCTACGTT GCCAGACATT CATGGGCTAC TATTTTGAAA
AAAAGCGGGG TGTCAACTTC TGTGATAAGT GAAGCAATGA AGCATGATAC AGAAAAGACA
ACTCAGATTT ATTTGGATAG CTTTGAGAAC GATATTATCG ATGATGCTAA TGAAAAAATA
TTGGGTTAA
|
|---|
| Protein sequence | MASVKVFLAK NKQLKNGEYP VWIRIIIDRK TKYSSLGIST KLEWWDENKC IPNKKNPNKF
ELETLISKKI AEVKKAIMES EIENKSYSAD EIIATTKKSK NKITVLKFYD EVIERFKKAN
KIGNAAVYRD SRKALFKFRK GKDLFFHELD PGMLNKLEEY LLGNDVSENS ISVYIRTLRS
LYNKAIIEGY VKKDCYPFDV YKISKLDTKT KKRAITKDLM QRIIDLKIDE DTNEWHSKNY
FLFSYYNMGM NISDIAILKN ANIENGRLKF KRMKTGKEYN IKLLKPAIEI LNYYLEHQLS
KYIFPILNDK VHINQNQIHN RIKKVTKQIN SGLKVIAKSC DIDVKLTTYV ARHSWATILK
KSGVSTSVIS EAMKHDTEKT TQIYLDSFEN DIIDDANEKI LG
|
|---|
| |