| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0848 |
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| Symbol | rgpD |
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| ID | 4185750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 972147 |
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| End bp | 973403 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638070850 |
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| Product | polysaccharide ABC transporter, ATPase component |
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| Protein accession | YP_677471 |
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| Protein GI | 110637264 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.105464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.234564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATA TAGCCATTCA GGTTGAGAAT ATATCAAAGA TGTATCGGTT GGGTGCATTG
GGAGGAGGTA CATTAGTTTC TGATGTAAAC AGATTTATTG CTAAAGTACG TGGGAAAGAA
GATCCGTATG CAGTGATCGG CTTAAACGAC CGTACATCTA AAGCAGAAAG CGAATACGTG
TGGTCGTTAA AAGATATTAA TTTTGATATT AAACAAGGAG ATGCCGTAGG CATTATCGGT
AAGAATGGTG CAGGCAAAAG TACGTTACTC AAAATTCTGT CTCAAATAAC AGCTCCTACA
ACCGGGAGTA TAAAAATTAA AGGCCGTATT GCATCTCTGT TAGAAGTAGG TACCGGATTT
CATCCGGACC TTACCGGTAG AGATAACATT TACATGAATG GCGCTATCCT GGGCATGTCA
CGCGCCGAGG TGCGAAACAA GTTTGATGAA ATTGTTGAAT TCTCTGGTGT AGAAAAATAT
ATTGATACAC CCGTTAAAAG ATATAGTTCG GGTATGTACG TGCGTTTAGC ATTTGCTGTT
GCCGCACATC TTGAACCGGA AATTTTGATT GTAGATGAAG TACTAGCCGT TGGTGATGCG
GAGTTTCAAA AAAAATGCCT GGGCAAAATG CAGGATGTGA ATAGCAAAGA CGGCCGTACC
GTATTATTTG TAAGCCACAA TATGGGTGCC GTAGCAGAGC TGTGCCGCTC AGGTATTGTA
CTTTCAAACG GCAACCTCAA ATTTATGGGA AGTAATTCGG AAGCAATCGC TTTTTATTCC
CGCATCGATT CCGATCAGAA TGCTGAAGGA TACAAAGCCA ATGAATTAAC AGCTGCATTA
AAACAGAATT ATATTGCTTC TATCAATGTG CTGAATCAGG ATGGACATGC CAATACGGAA
TTTTTGTTTG ATGACAGGAT TACAATTAAA CTAGTATTAA AAAGTAATAC AGGTAAAATT
GACACAACAC TTGGATTGGC CTTATTAAAT AAAAATCTGA ACCGCGTATT TACATTGCAT
AGAGTTATTC AGGCAGATAA AAGTGCGTGT GAAGTTGAAA TAACATTGCC TGCTCAATTT
ATAGCACCCA ATTTATATTC ATTCCATGCG GCATTATTTA TTCCCAATAA AATAGTCTTT
GATAATATTG AAACCGTTTG CCCGATAAAG ATTATTGATA ACGGTACTGA ATTTACTGCA
TATGAAGGCT TGGATTACGG GAATGTTATC ATACATGCTG AATGGCGGAT AAATTAA
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| Protein sequence | MSDIAIQVEN ISKMYRLGAL GGGTLVSDVN RFIAKVRGKE DPYAVIGLND RTSKAESEYV
WSLKDINFDI KQGDAVGIIG KNGAGKSTLL KILSQITAPT TGSIKIKGRI ASLLEVGTGF
HPDLTGRDNI YMNGAILGMS RAEVRNKFDE IVEFSGVEKY IDTPVKRYSS GMYVRLAFAV
AAHLEPEILI VDEVLAVGDA EFQKKCLGKM QDVNSKDGRT VLFVSHNMGA VAELCRSGIV
LSNGNLKFMG SNSEAIAFYS RIDSDQNAEG YKANELTAAL KQNYIASINV LNQDGHANTE
FLFDDRITIK LVLKSNTGKI DTTLGLALLN KNLNRVFTLH RVIQADKSAC EVEITLPAQF
IAPNLYSFHA ALFIPNKIVF DNIETVCPIK IIDNGTEFTA YEGLDYGNVI IHAEWRIN
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