| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0830 |
|---|
| Symbol | czcB |
|---|
| ID | 4185735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 934773 |
|---|
| End bp | 935879 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638070835 |
|---|
| Product | cation eflux system protein |
|---|
| Protein accession | YP_677456 |
|---|
| Protein GI | 110637249 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0187806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA ATAATAAAAT GAACTGCTTT GTTTTGCTGC TGGTTTTTGC AGGTTTACTT
GGAACGTCTT GTTCGGATGA AAAAAAATCA ATTGCTGAAC CTATAGATAC GAATTGTTTG
TCAGACAGCA TGCTTAAACT TATTGAGTTT GATACCATAC AATATAAACA GGTAACAACA
AGGCTGTTGC TGAGCGGCAA GATCACAGAG AATGAGGATA AGCTGGTAAA AGTATATCCG
TTGGTTGGCG GTTATGTAAA AGATTTACGG GTGGAGCTGG GCGATTATGT AAATAAAGGA
GATGTGCTTG CGGTTATTCA AAGTACCGAA GTTGCAGATT TTCAAAATCA ATTGGTTATC
GCAGAATCGA ATTTAAATAT TGCAGAAAAA AATCTGCAGG TAACGCAGGA TATGTTTGAA
GGGGGATTGT CTTCAGAAAA GGATCTGGTT GTAGCTAAAA AAGAATATCA GAAAGCAGTA
GGAGAGCTCA GAAGAATTAA AGAAGTCATG AACATTTATG GTGTTGGCGA ATTTTCTGCC
TATACCGTTA AAGCACCTAT TTCAGGTTTT ATTACAGAAA AATTTATTAA CGAGAATATG
CAGTTCCGCA TGGATAATAC GGAGCAGCTT TTCACCATCG CTAACCTGGA CAATGTATGG
GTGATTGCAA ATGTATTTGA ATCGGATATT GATCATGTGA AAGAAGGCAG TGAGGTTGAA
GTGACAACCT TATCTTACCC CGATCAAGTC TACAAGGGCC GGGTAGATAA AATTTTCAAC
GTACTTGACA AAAGCTCAAG GGTAATGAAA GTGCGTATCA TACTTGATAA CAAAGGCTAT
AAGTTAAAGC CTGAAATGTT TGCCAGTATA TCACTCCTAA GTCAGTCCGG TGTAAAGAGT
CTGATTGCTC CTGAAAACAG CCTCATTTTT GATAACAATA AAGATTATGT ACTGGTATAC
AAAGACGCTT GTCACATTGA TATCAGAGCG ATTGAGCGTA TTGATAAGAT TGATAACAAC
GTACGTATTC AGTCTGGTTT GAAAGAAGGG GAACGCGTAA TTACAAAACA CCAGTTGTTA
ATTTATAATC ATTTAATTAA TAGATAA
|
|---|
| Protein sequence | MNLNNKMNCF VLLLVFAGLL GTSCSDEKKS IAEPIDTNCL SDSMLKLIEF DTIQYKQVTT
RLLLSGKITE NEDKLVKVYP LVGGYVKDLR VELGDYVNKG DVLAVIQSTE VADFQNQLVI
AESNLNIAEK NLQVTQDMFE GGLSSEKDLV VAKKEYQKAV GELRRIKEVM NIYGVGEFSA
YTVKAPISGF ITEKFINENM QFRMDNTEQL FTIANLDNVW VIANVFESDI DHVKEGSEVE
VTTLSYPDQV YKGRVDKIFN VLDKSSRVMK VRIILDNKGY KLKPEMFASI SLLSQSGVKS
LIAPENSLIF DNNKDYVLVY KDACHIDIRA IERIDKIDNN VRIQSGLKEG ERVITKHQLL
IYNHLINR
|
|---|
| |