Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0253 |
Symbol | |
ID | 4185004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 303628 |
End bp | 306285 |
Gene Length | 2658 bp |
Protein Length | 885 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638070263 |
Product | hypothetical protein |
Protein accession | YP_676885 |
Protein GI | 110636678 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.274245 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAAG CGATACTACT GCTTGGCGTA GTCCTTGGAT CTTTCTTCCA GTGGGCAGCT GCACAAACTT CCGTAATCAA CGGATTAACC GTAATAGTAA ACTATTCCGA TTATTCACTT GGCATTCCAA CAGATTCAAT TGCTATGCTG ATGAATCAGC CTGGCTTTAA TTCCTGGAAT TGCCATGGTT CAGTGAAAGA TTTTTACTAT GTTCAAAGCA ACAGTAAAGT AAGCCTTAAC AGTACGGTAA TTGAAGTATC CTTGCCTCAG AGTTTCCATT ACTATCACGA TGATGATGCT ACCAGTGGAA ACTTTATACC ACACATTGCA AGCCAGATTG CAGCTAAATA TCCGAATGGG TTTCAGAATT TAAGTCTGCA TCCGGAAACA GCAAGACTGC ATCATTTTAA TATCATCAGC CGCGGCTCAA GAGGCATCGG TGTTGCATAT GGCACGGATG GTTCGTTTGT AAAAAACAAC AATCAGCAGC TGCAGATCGG CGGCCTGAAC GTGTATAATG TTACCGGTAT AGAAAAACCA ACCGTAAATA CTATTTGTCA TGAAGTTGGC CACAGTGTAT TTGGCTGGAC AGATTATTAC AGAACGAATG TAAGTAACCT TGGAGACTTC TGTGTAATGG CCAGTGCCGG AACAGAAACT CCAATGCCTG TCAATCCTGC GTTGCGTTAC ATCAAAGGCT GGACAAACGA AAACAACGCA ATTTCAGCTA CAACAACGCA GACGTATACC GTTACTTCAA ACAGTTACAA TCAGGTTTTT AAATACACAA ACCCAAACAA TCCAAAAGAA TATTTAATTA TTGCCGCGCA CATGTATGGC GGGTATTACC AGGCAGCTAA AGGCCCGGAT CAGGGCTTGG GTATTTATTA TGTGGATGAA GATGGCGGTA TTGATGGCAA CACAACTACA CCAAACGGTT ATCCGCCGCT TGTGCATCTG ATTCAGGCTG ATGGCCAGGA TGAATTGCAA ACAGAAGGAA GCCCGGATGT ACGGGGTGAT TCATATGATC TGTTCGATAA TAATTCAAGT GTCTTTTCAT CTTTCACACA TCCATTCAGA TGGAAAAACG GAAATGAAAC AGGTCTTACA ATTACAAACA TCAGTGCTGT GGGACCAACC ATGCAGTTTA CTGTTCAGGC AAGAAATCCT AATACGGTCA GCGTACAGAC CAATGCTGTA AACGGCGGCA GTATCTATCC AAGCGGTTTA GTTGAATACA GCATCTACCA GACAATAAAT TTTGCCATTA CACCAAACGT AGGTTATGTT ATCGATCAGG TATATTTTGA TGGTGCTCCG ATTGGTACGC CGCAGCACTA TGGGTTTACC GGAATGAGCG GTGCACATGC ACTGCGTGCA ACATTCAAAC GTGATACAAC TATTGATGCA ATACCTGCTC CCTGGGCTAA ACAGGAAATC GGAACAACAA GAAGACCAGG CGTTGCCGGA TACAGAAACG GCGTATTCGG AATTGAATCC GGCAGCTATG ATATCTGGAA CGAAAGCGAT GGTTTGAATT ACGTGTATCA ATCGTTACAG GGAGACGGGC AGATTGTAGC ACACATTAAA GATATGAACA AAGCGGCTGG CTGGTCGAAA GCAGGTATCA TGATGCGTGA GACATTGAGC GCAGATTCAA AACATCTGAT GATTGTGCAC ACACCACAGA ATGCAGTTGC AACTCAATTA AGATCCGCAA CCGGTGGTTC ATCTGTTAAC AATCCGGATG ACATAAAAAA TCTGCATTTC TATAATGCAT ACAAATGGTT AAAAATAACA CGCGAAGGAA ACAGTTTCAA AAGTTACTGT TCAAATGATA CTATTAACTG GGTATACGTT GGTGGTTCTA CCATCAATAT GGGTTCTTCT ATTTATGTGG GTTTATGTGC AGGTGTCGGC AGTGATCAGT TAAATACGAT TGTAACATTT GACTATGTAA AAGTTACAAA ATCTGCTGTG GCAGAAAATT TATTTACACG CTTTGGAATA CCACGTAACG CGCCTCTGCC CACAACAATA AAAAACTTCA AGTATGTATA TTCTGTTGGC TCAGGCGGAC CGAATTTAAG CAACGTATCG CTTGCTGTTA TCAACTGGGA TCTTCCTAAC AATGGTCTGT GGCAGTTCTC CTTACAGACA AATAATGGTG CACCACGCTG GTATACAAAT ATCCCTTCAT ACGGATTTAA TAGTTTTGGT GCTTCATCAC CTAAGATATA CATTGATGGT TCAATGGACT TCCCTGGTTT CAGCGGTTTC TTCTTTGCAA ATACATATAA CACGAATGAT CTGGTATTGG TAAATCAATC GGGTGCTTAT GCTGTGATCT TTACAAACAC ACCACCCGCT GCAAGAACTG CTTCGGATGA TTTTACTTCT ACAACATCCA CATCGTCTGT AGAAATTTCT TCTGTTGTTT CTGCACCAAA TCCGTTTACG GAACAAACAA CTGTTTCTAT TCCGGATGCA TTTGGCGAAG CAACAATTAC CGTATTGAAC GCAAGCGGTA TTGTTGTTGA AACAAAAATA GCAAGCAAAT CATTTACGTT AGGCGATCAG TATGCTGCAG GTTTGTACCT GGTGAAAATT GCATCGGACT ATAAAACAGA AACGATCCAA ATCATTAAAG CGCACTAA
|
Protein sequence | MKKAILLLGV VLGSFFQWAA AQTSVINGLT VIVNYSDYSL GIPTDSIAML MNQPGFNSWN CHGSVKDFYY VQSNSKVSLN STVIEVSLPQ SFHYYHDDDA TSGNFIPHIA SQIAAKYPNG FQNLSLHPET ARLHHFNIIS RGSRGIGVAY GTDGSFVKNN NQQLQIGGLN VYNVTGIEKP TVNTICHEVG HSVFGWTDYY RTNVSNLGDF CVMASAGTET PMPVNPALRY IKGWTNENNA ISATTTQTYT VTSNSYNQVF KYTNPNNPKE YLIIAAHMYG GYYQAAKGPD QGLGIYYVDE DGGIDGNTTT PNGYPPLVHL IQADGQDELQ TEGSPDVRGD SYDLFDNNSS VFSSFTHPFR WKNGNETGLT ITNISAVGPT MQFTVQARNP NTVSVQTNAV NGGSIYPSGL VEYSIYQTIN FAITPNVGYV IDQVYFDGAP IGTPQHYGFT GMSGAHALRA TFKRDTTIDA IPAPWAKQEI GTTRRPGVAG YRNGVFGIES GSYDIWNESD GLNYVYQSLQ GDGQIVAHIK DMNKAAGWSK AGIMMRETLS ADSKHLMIVH TPQNAVATQL RSATGGSSVN NPDDIKNLHF YNAYKWLKIT REGNSFKSYC SNDTINWVYV GGSTINMGSS IYVGLCAGVG SDQLNTIVTF DYVKVTKSAV AENLFTRFGI PRNAPLPTTI KNFKYVYSVG SGGPNLSNVS LAVINWDLPN NGLWQFSLQT NNGAPRWYTN IPSYGFNSFG ASSPKIYIDG SMDFPGFSGF FFANTYNTND LVLVNQSGAY AVIFTNTPPA ARTASDDFTS TTSTSSVEIS SVVSAPNPFT EQTTVSIPDA FGEATITVLN ASGIVVETKI ASKSFTLGDQ YAAGLYLVKI ASDYKTETIQ IIKAH
|
| |