| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHAB381_0715 |
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| Symbol | |
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| ID | 5408332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter hominis ATCC BAA-381 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009714 |
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| Strand | - |
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| Start bp | 657747 |
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| End bp | 659621 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640870414 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001406295 |
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| Protein GI | 154148465 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACTT CCAAAGATAT TTTCAGTCAA ATCGAGAAAT TTTTCAGTGA AAATCAAAAA
AATTATGTAA CTTTTGAGCG TTTAATTAAA TTTTTTGATA AAGCGCCAAC ATCCACTCAA
GTAAAAAAAA TTGAAGATTT GGCGAAAAAT TTTAAAATCA AGCTTATTTC GTCGGCAGAA
ATTGCAAAGA TAAAAAATAT TGAAGATTTA AAGCGTATCA AAGAACGTGA AAAAAAAGCG
AAAAGCGAGC TTGAAAAAAA CGATGATTTT GATATCGCAA GTGATAATGA ACTTTTGGAA
TGGAGCCGCT CTGATAGTCC TGTACGTATG TATTTACGAG AAATGGGCGC AGTTGATCTG
CTAAAAAAAG AAGAAGAAAT CGAAATCAGT AAAAAAATAG AACTTGGCGA AGATATCATA
ATTGACGCAT TTTGTTCGGT ACCTTTTTTA ATTGATTTTA TTTTGGCTTA CGAAGAGCCG
CTTATAAACC GTGAACGCCG TGTAAAAGAA CTTTTCAAAA ATTTCGATGA AAATGAAGAA
GAAGAAAACG AAGAAGAAAT CGAAGAAGAC GAAGAGAATG AAGAAGAAAA CGTGGCAAAT
AAAAAAGCTA AAATTTCAAG ACGCAATGAT AAGAGAGCTG AAAAAGTAAT GAAAAGCTTT
AAAGCGCTTG AAAAAGCAAA AAAAGACTGG GTAAAATATG CTGACAAAAA TAAGTCGGAT
ATTTTTGATA TGAATAAAAA AACATTGCTT CAAAAATTAA ATCTTACATT TAAAAAGAAA
ATCTTAAAAG AAAAATTGAT GGATTTGGGA CCTACCAGCA AACTGATAAC CGAAATTGTA
AAATCAATTG AAAAGGCCCT AAAAAGCGAT ACCGAATTTG CACGCGAATT AAAACGGCTT
GAATATAAAA TTCCGCTTAT AAACTTGCCT GATCACAGAA AAAGGCACGA AGAAATTTTA
AAAGATATAA TTTCTCTTTC AAAAGATGAA ATTTCTCAAA TGGTATTTGA AAATACAACC
GTTTCAACAT ATATGGATAT AAAACGACTT TTCCAAACAC GCGAAGCTAG CAAACAGGGA
TTTAACATCG ATCCGGATCG TTTAAAACAA ATTTTGGAAC AGATAAAACG CGGTAAGAAA
ATTTCCGATG AAGCAAAATC TTTGATGGCA AAATCTAATT TACGCCTTGT TGTAAGCATC
GCTAAACGCT ATACAAATCG AGGTCTTCCG TTTTTAGATT TAATTCAGGA AGGAAATATC
GGACTTATGA AAGCTGTAGA TAAATTTGAA TACCGAAAAG GATATAAATT TTCTACTTAT
GCTACCTGGT GGATTCGTCA GGCAATAAGT CGTGCAATTG CCGATCAAGC ACGCACAATC
CGTATTCCAA TCCATATGAT TGAAACTATA AACAGAATAA ATAAAATTAA TAGAAAATAT
GTCCAAGAAA ACGGGAAAGA GCCCGATATC ACGATTTTGG CCAAAGAAGT TGGGCTTAGC
ATCGATAAAA TCAAACAGGT AATTAAAATA ACAAAAGAAC CGATTAGCCT TGAAGCTCCT
GTCGGTAACG AAGACGACGG AAAATTCGGC GATTTCGTAG AAGATAAAGG AACTATTTCT
CCGATTGATC AAATTTTGAA AAACGATTTG AAAGAACAAA TAGACAAAGT TCTGGATCAA
TTGAATGAGC GCGAAAGAGC GGTAATTCGT ATGAGATTTG GACTTTTAGA CGATGAAAGC
GACAGAACAT TGGAAGAAAT CGGCAAAGAA CTAAGTGTAA CTCGCGAACG TGTTCGCCAA
ATCGAAGCAA GCGCCATAAA AAAATTAAAG CACCCGAAAG TCGGCCGTGA TCTTAAAAAA
TATATAGAAA GCTGA
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| Protein sequence | MATSKDIFSQ IEKFFSENQK NYVTFERLIK FFDKAPTSTQ VKKIEDLAKN FKIKLISSAE
IAKIKNIEDL KRIKEREKKA KSELEKNDDF DIASDNELLE WSRSDSPVRM YLREMGAVDL
LKKEEEIEIS KKIELGEDII IDAFCSVPFL IDFILAYEEP LINRERRVKE LFKNFDENEE
EENEEEIEED EENEEENVAN KKAKISRRND KRAEKVMKSF KALEKAKKDW VKYADKNKSD
IFDMNKKTLL QKLNLTFKKK ILKEKLMDLG PTSKLITEIV KSIEKALKSD TEFARELKRL
EYKIPLINLP DHRKRHEEIL KDIISLSKDE ISQMVFENTT VSTYMDIKRL FQTREASKQG
FNIDPDRLKQ ILEQIKRGKK ISDEAKSLMA KSNLRLVVSI AKRYTNRGLP FLDLIQEGNI
GLMKAVDKFE YRKGYKFSTY ATWWIRQAIS RAIADQARTI RIPIHMIETI NRINKINRKY
VQENGKEPDI TILAKEVGLS IDKIKQVIKI TKEPISLEAP VGNEDDGKFG DFVEDKGTIS
PIDQILKNDL KEQIDKVLDQ LNERERAVIR MRFGLLDDES DRTLEEIGKE LSVTRERVRQ
IEASAIKKLK HPKVGRDLKK YIES
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