Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CCC13826_2023 |
Symbol | ligA |
ID | 5597617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter concisus 13826 |
Kingdom | Bacteria |
Replicon accession | NC_009802 |
Strand | - |
Start bp | 1298591 |
End bp | 1300534 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640929864 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001467146 |
Protein GI | 157164612 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000845936 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAAAC AAGAGTATGA AAAAGCGGTA GATACGCTAA ATGCGTGGGC AAAGGCCTAC TACGACGAGG ACGAGCCACT TGCAAGCGAC GAGGAGTATG ACGCGCTATA TCACGCGGTT TTGGCTTTCG AGCAGGCAAA TCCCAGTGAA ATTTCGCTAT TTTCGCCGAC TAAGCGAGTG GGCGGAGGCG TGAAAGAGGG CTTTAGCAAG GCAAGCCACA TAAAGCGCAT GTGGAGCATG GAGGATATCT TTAGTCTTGG CGAGCTTGAT GCATGGCTAA AGCGCGGAGA GAAGGAGAAT TTGACCTTTG TAGCTGAGCC AAAATTTGAC GGAGCGAGCC TAAATTTACT CTACGAAAAT GGCGTTTTAG TTAGGGCGAT AACCAGAGGA GACGGCGTTA CAGGCGAGGA CGTGACGCAA AATGCAAGGA CCATTAGCTC GGTGCCAAAG AGCATTAGCT ACAAAGGGCT CATTGAAATT CGTGGCGAAG TCGTCATAAG AAAAGATGAC TTTGAGCTAT TAAATATGGA GCGCGCAAAA GAGGGCGAGG CGCCACTTTC AAACCCTAGA AACGCAGCCG CAGGAAGCCT TAGACAGCTT GATAGCGCAG TCACTGCAAA AAGAAAGCTA CTTTTTATAC CCTGGGGCGT GGGCGAGCAG AGCCTTGGGC TAAAAGATCA CAGCGAGGTG ATGAAATTTG TGCGAGATCT TGGCTTTGAG AGGGATGATT TTTTCAAAAT TTTAAAAAAA GATGAGCTTG AGGCTGCGTA TAACGAGCTC TTGGCAAATC GCGACTCAAA AAGCGTAATG ATGGATGGCA TGGTGATACG TGTAAATGAC CTTGCGCGCT GTGAGCAGCT AGGATATACG GTCAAATTTC CAAAATTTAT GGTGGCGTTT AAATTTCCAG CCATTGAGAA GGTCACAAGG CTAAAAGACG TGGCACTTCA GGTCGGTAGA AGTGGCGTGG TGACGCCTGT TGGCGTGCTT GATGAGGTAA ATATAGATGG CGCAAATGTA AAATCCGCCA CTCTTCATAA CTTTGATGAG ATCGAGCGCC TTGGCGTCAT GAAAAACGAC TACATCGGCA TCATCCGCTC AGGAGATGTG ATACCAAAGA TCACAAAGGT TTTTAAAGAT AGACGAGATG GCAGCGAGCA AGCGATAGAA AGGCCTAAAT TTTGCCCAGT TTGCGGTTCG CACCTGCTTG ATGAAGGTGT CTTTGTAAAG TGTCAAAATT TAAGCTGCAG GGCAAGAGTG GTGGGCTCGA TAATCCACTA CGCATCGAAA AAATGCCTAA ATATCGACGG CCTTGGCGAT GCGATAGTAA ATTTGCTATT TGACAAGGGG CTTATTGCTT GCATAAAAGA CATTTACGGC CTTAAATTTG ATGATCTTAT GTCGCTTGAG GGCTTTAAAG AGAAAAAGGT AAATAACCTT TTAAATGCCA TTGAGGCTAG CAAAGGTGCG GAGCTATCGC GCTTTATCAC GGGCCTTGGC TGCGAGCATA TCGGCGAGGT GGCGGCAAAG AAGCTAGCAA GTAGCTTTGG ACTGGACTGG CTTGATGCTA GCTTTGAGGA GCTAACCGCA CTTGAGGGCT TTGGCGTGGA GATGGCAAAT AGTTTAATCG ACTTTGCTGA GGTAAATAGG GACGAAATTT TAGCTTTAAG CCAGATCGTG CAGCCAAGCG TGACGCAGGT GCAAAGCATC TCAAATGCGC TAAGTGGCAA GACGGTCGTT ATAACTGGCA CGCTAAGTCG CCCAAGAGAT GAGATAAAGG CGGAGCTTGA GAGTTTTGGT GCAAAGGTTT CTGGCTCAGT CTCTAAAAAA ACGGACTTCG TCCTAGCTGG CGAAGAGGCT GGCAGCAAGC TAGATAAGGC AAATGAGCTA GGCGTGCTGG TGATTGATGA GAGCGAATAT GAGAGGCTAA AACTTGAGGT TTGA
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Protein sequence | MTKQEYEKAV DTLNAWAKAY YDEDEPLASD EEYDALYHAV LAFEQANPSE ISLFSPTKRV GGGVKEGFSK ASHIKRMWSM EDIFSLGELD AWLKRGEKEN LTFVAEPKFD GASLNLLYEN GVLVRAITRG DGVTGEDVTQ NARTISSVPK SISYKGLIEI RGEVVIRKDD FELLNMERAK EGEAPLSNPR NAAAGSLRQL DSAVTAKRKL LFIPWGVGEQ SLGLKDHSEV MKFVRDLGFE RDDFFKILKK DELEAAYNEL LANRDSKSVM MDGMVIRVND LARCEQLGYT VKFPKFMVAF KFPAIEKVTR LKDVALQVGR SGVVTPVGVL DEVNIDGANV KSATLHNFDE IERLGVMKND YIGIIRSGDV IPKITKVFKD RRDGSEQAIE RPKFCPVCGS HLLDEGVFVK CQNLSCRARV VGSIIHYASK KCLNIDGLGD AIVNLLFDKG LIACIKDIYG LKFDDLMSLE GFKEKKVNNL LNAIEASKGA ELSRFITGLG CEHIGEVAAK KLASSFGLDW LDASFEELTA LEGFGVEMAN SLIDFAEVNR DEILALSQIV QPSVTQVQSI SNALSGKTVV ITGTLSRPRD EIKAELESFG AKVSGSVSKK TDFVLAGEEA GSKLDKANEL GVLVIDESEY ERLKLEV
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