| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0517 |
|---|
| Symbol | |
|---|
| ID | 4008994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | - |
|---|
| Start bp | 2805677 |
|---|
| End bp | 2806348 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637952160 |
|---|
| Product | extracytoplasmic-function sigma-70 factor |
|---|
| Protein accession | YP_554780 |
|---|
| Protein GI | 91779572 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGG TGCTCGTCCG GCGAGAGCCT TCAACAGCGA TGCCGATATC GGTTCTCAGC
ACCGGCGGCG CTTGTCCACC CGTTTCGCGG CGCGCTCGCG CCGACTCGCG TCCGGTCGAT
TGGGAGAAGG GCACGCTGCT CGACGTGCTG ATCGACAACC GCCCGATGCT CGTCAATCTG
GCGCGCGGTT TCGTGGGTTG CGCGAGCCTC GCGGAAGACG TGGTGCACGA CGTCTTCATC
AAGCTGATCG ACTTTCCGGA TCAGGACGCG GTGCGTCAAC CGGTCGCGTA CGTGACACGC
ATGGTGCGCA ACGCGTCGAT CGACGCCTTT CGCCGCCAGA GCCTGGAAAA CACCTATCAC
GCCGACGAAG ACGACGGCCT GCACGTGCCG TCGCCGGAAC CTTCGCCGGA AGCCGCGCTG
CTCGTGCGGG ATACGCTCCG GCACGTCTAC AACGCGCTCG ACCAGTTGCC GCCGCGCAGC
CGCGCCGCAT TCGAAATGGT GCGGCTGCGC GAGGAAACGC TGCAAAGCAC GGCACGCGCG
CTCGACGTCT CGCAAACGCT GGTGCACTTC ATGGTGCGCG ACGCCGAGAA GCATTGCGCC
GATTGCCTCG ACGCCCGCAA TCGTGGCGTC GCCGGTCCCG CGTTCTGCAA CGGCCGCGCG
CGCCGGCGGT AA
|
|---|
| Protein sequence | MAEVLVRREP STAMPISVLS TGGACPPVSR RARADSRPVD WEKGTLLDVL IDNRPMLVNL
ARGFVGCASL AEDVVHDVFI KLIDFPDQDA VRQPVAYVTR MVRNASIDAF RRQSLENTYH
ADEDDGLHVP SPEPSPEAAL LVRDTLRHVY NALDQLPPRS RAAFEMVRLR EETLQSTARA
LDVSQTLVHF MVRDAEKHCA DCLDARNRGV AGPAFCNGRA RRR
|
|---|
| |