| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5456 |
|---|
| Symbol | |
|---|
| ID | 4016415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007950 |
|---|
| Strand | - |
|---|
| Start bp | 209012 |
|---|
| End bp | 209818 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637945076 |
|---|
| Product | conjugal transfer protein TrbG/VirB9/CagX |
|---|
| Protein accession | YP_552208 |
|---|
| Protein GI | 91791258 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0200156 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTC TAGCTGCAGC CATCGCGACG TGTCTGTTCC ACTTGGCTGG GCCAGCTGCC
AATGCCCAGC AGATCGCCAC TCCTGTGAAT GGCGACACAC GCTTGGTGAC ATTCGACTTC
GACCCAGATG TCACGTACTT GATTCTTACG CGCCCCAAAT CAGTCACAGA CGTGATGCTT
GCACCAGGGG AACAGGTCCT TTCACTTGTC GCCGGCGACA CGGTCAACTT TGTATTTCAG
GTGTCCGCGA GCCGCGAGCA CATCTTCATC AAGCCAAAGT TTGAAGGACT GACGACCAGC
GCTAGCCTGG TGACGAACAA AACCACCTAT CAACTCATTC TTCGAAGCGC GAATGAGACT
GGGAAGTGGC ACCAACGAGT CACATGGAAC AACCCTGAGA TGGTCCTTCA GGATGTAGCG
GCCTCCTCAA GAGGCGCGCC GCAGAGGGAG ATAGCCGCGC AGTCTGAACA GCCCGTCCGC
GTTGCAGGCG GCGGCGAGTC AGCGCTTGCG ATCGACAAGC TCCAGTTCAA TTACCTCATC
ACTGGGACCG ACGCCATCAA ACCATCGCAG GTCTTCGATG ACGGAATACG GACCTATTTC
CGGATCCCTG AGGGTATGCA GGAAATGCCC GCACTGTTCA CCCTCAAGGA CAGCGAAGCT
TCACTGGTGA ACTACGCTGT CAAGGACGGC TACCTGATAG CCCAGGGCGT GGGCGGGATC
TTCTTGCTCA AGTTGGGTAA GCAGGAAGTG CGCGTGGAAA AAGAGGGGCG CCGGAACTTC
TTCGGTGGAT TGATCAATGG CCGATAA
|
|---|
| Protein sequence | MRFLAAAIAT CLFHLAGPAA NAQQIATPVN GDTRLVTFDF DPDVTYLILT RPKSVTDVML
APGEQVLSLV AGDTVNFVFQ VSASREHIFI KPKFEGLTTS ASLVTNKTTY QLILRSANET
GKWHQRVTWN NPEMVLQDVA ASSRGAPQRE IAAQSEQPVR VAGGGESALA IDKLQFNYLI
TGTDAIKPSQ VFDDGIRTYF RIPEGMQEMP ALFTLKDSEA SLVNYAVKDG YLIAQGVGGI
FLLKLGKQEV RVEKEGRRNF FGGLINGR
|
|---|
| |