| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5248 |
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| Symbol | |
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| ID | 4015953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007949 |
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| Strand | + |
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| Start bp | 357555 |
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| End bp | 358661 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637944875 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_552007 |
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| Protein GI | 91791056 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.233456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAAG ATAGTTCTGC ACAGTCCGCT GCCGCCACCA TCAGAGCACT TCTCACAGTG
GTGGATAGTG AGATGCCCTT TAGTGACATT CTCGTGTCCG CTGACGAGCC CGTCATGCTT
CGAAATGCCA GTGGTTGGAC ACCGTTTCCA GACAGCGCCT ATAGCAATGA TGACATCGAG
TTTATTCTGT CGGCAATGGA GCCTGACTGG CAGTCCTTGC TTACTAATAC CGGTGGCTTC
AGCCGTCCGT ACCTGGTTGG CAGTTGGCGC TTGCGGGTGA CTGCGTACCT GGCCAACCGC
GGCGACAAGA AAATGTTGTC CATACGGCGG ACGCCTGTAA CCCCCATGCC GCTTGAAAAG
ACAGGTCTCT CCCCGTCTGT GAAATTGATG GTGGAGAACC CCAAAGGCTT GATATTGCTT
TCCGGTCCTA CTGGGTCCGG AAAGACGACG ACCATGGCTG CGCTCATTGA CTACATCAAT
TCAACCAGAA GCGCGCATGT GGTCACGATC GAAGATCCGA TTGAGTATGA ATTCGTTCGC
AACAAGTCTG TGTTTTCACA GCGCGAGGTT GGGGCCGATA CGCCGTCGTT TTTCGAGGGT
ATGCGTGGCG CGATGCGTCA ACGGCCGGAT GTGATTGTTA TCGGCGAAAT TCGTGACCGA
GATACTGCGG AAAATGCAAT TCTCGCAGGG GAGTCTGGGC ATCTCGTGAT CGCAACCCTG
CATGCCAGTT CTGCCTACGG GGCAGTGCAG AAATTGGTGT CGTTTTTCCC TGGTGAAGAG
CTGGCCAGGA CTGCCGGCTT AGCGACATCC TTGATGGGTG TGGTTCATCA TGCAATCGTC
CCGACGGTCG ACAAGCTTAC CGGTGTGTTG GCCTCCGAGC TCTTGTTCAA TCATCATCAA
GGGTTTTCGG CAAACCTCAC CGATCCCCAC AAAGTAAATA GGGAGCTTGA GGATCCGACG
GACAAGATTT CCCGTTCCAT GGCCGCAAGC CTGGTTGATC TGGTCAGGGC GGCAAAGATC
TCAAAATCTG ACGCGTTGAG GAGTGTCGCG GGTCAGGGCG CCGTCTGGAA ACAAGTGAAT
GAGCGATTGA ACTCTGTAAA GGTGTGA
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| Protein sequence | MDQDSSAQSA AATIRALLTV VDSEMPFSDI LVSADEPVML RNASGWTPFP DSAYSNDDIE
FILSAMEPDW QSLLTNTGGF SRPYLVGSWR LRVTAYLANR GDKKMLSIRR TPVTPMPLEK
TGLSPSVKLM VENPKGLILL SGPTGSGKTT TMAALIDYIN STRSAHVVTI EDPIEYEFVR
NKSVFSQREV GADTPSFFEG MRGAMRQRPD VIVIGEIRDR DTAENAILAG ESGHLVIATL
HASSAYGAVQ KLVSFFPGEE LARTAGLATS LMGVVHHAIV PTVDKLTGVL ASELLFNHHQ
GFSANLTDPH KVNRELEDPT DKISRSMAAS LVDLVRAAKI SKSDALRSVA GQGAVWKQVN
ERLNSVKV
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