Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_3808 |
Symbol | prfC |
ID | 4013527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | + |
Start bp | 3995559 |
End bp | 3997175 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637943461 |
Product | peptide chain release factor 3 |
Protein accession | YP_550604 |
Protein GI | 91789652 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG4108] Peptide chain release factor RF-3 |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGAAA CCACCGAAAT CGCAAAACAG GTCAAGCGCC GCCGCACGTT TGCCATCATT TCCCACCCTG ACGCCGGCAA GACCACGCTG ACCGAGAAGC TGCTGCTGTT TTCGGGTGCG ATCCAGATCG CCGGCAGCGT CAAGGCCCGC AAGGCCGCGC GCCATGCCAC GTCGGACTGG ATGGAGATTG AAAAGCAGCG CGGCATCTCG GTGGCCAGCT CGGTCATGCA GATGGAATAC CGCGACTGCG TGATCAACCT GCTCGACACC CCCGGCCACC AGGACTTTTC GGAAGATACC TACCGCGTGT TGACGGCAGT CGATGCCGCG CTGATGGTGA TTGACGCGGC CAACGGCGTC GAGCCGCAGA CGCGCCGCCT GCTGCAGGTC TGCCGCGCAC GCAACACGCC CATCCTCACG TTCGTCAACA AGATGGACCG CGAGGTGCAG GACCCGATGA GCGTGATGGA CGAGATCGAG CGTGAACTTG GCATGGCGGT GGTGCCCTTC ACCTGGCCGG TGGGCATGGG CAAACTCTTT CACGGCGTTT ATGACCGGCG TGAAGACCGC ATGCGCGTCT TCAGCCCGGG TGAAGAAAAA GCGGGCGGCG ACGATGAAAT CCTGGCCGGC CTGGACAACG CCGAAGCCGC GAAACGCTTT GGCGCCGAAT ACAAGCAGGC GCAGGAAGAG ATTGAGCTGG TTGCCGGCGC CTCGCACGAA TTTGACCGCG CCCAATTCCT CAGCGGCAAA CAGACGCCCA TGTTCTTTGG CTCGGCCATC AACAACTTTG GTGTGCAGGA GGTGCTGGAC GCGCTGGTGG ACCTGGCCCC CGCCCCAGCC GAGCGCGAAG CCATCCAGCG CGTGGTGCAG CCTGACGAAA AGAAATTCTC CGGCGTGGTG TTCAAGATCC AGGCCAATAT GGACCCGGCA CACCGCGACC GCATTGCGTT TTTGCGCGTG GCCAGCGGCG AGTTCACGCG CGGCATGCGC CTGAAGGTGG TGCGCAGCGG CAAGGAGTTG CGGCCCAACA CGGTGGTGAG CTTCATGAGC CAGCGCAGGG AATTACTGGA TACTGCGTTC GCCGGTGACA TCATCGGTAT TCCCAACCAC GGCGTGCTGC AGTTGGGCGA CACGCTCACC GAAGGCGAAG CGCTGCAATT CACCGGCCTG CCCTTCTTCG CGCCCGAGAT GTTCCGCTCC GTTGAAGTGG CCGATCCGCT GCGCAGCAAG CAGCTGCGTG CCGGCCTCAC GCAGCTGGGT GAAGAAGGTG CGATCCAGGT GTTCCGGCCC ATTGCCGGCT CCGTGCTGCT GCTGGGCGCC GTCGGCCAGC TGCAGTTTGA AGTGGTGGCA CACCGCCTGG AGCACGAGTA CGGCGTCAAG GCCCGCATCA TGGGCAGCAA CTTCAACCTG GCCCGCTGGG TCACCAGCGA CGACGCCAAT GAGTTGAAAA AATTCATGGA TGCCAACGCG CACCGCGTCG CGCTCGATGC GGTCGATGCG CCCACGCTGC TGGTGGACCA CAGCGCCACC TTGCGCGCGG TCGAGCAGCA ATGGCCCAAG ATCCGGTTCC ATGCGCTGCG CGAGCATGCC GGGCTGGTGT TTCAGTCAAA GATGTAA
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Protein sequence | MSETTEIAKQ VKRRRTFAII SHPDAGKTTL TEKLLLFSGA IQIAGSVKAR KAARHATSDW MEIEKQRGIS VASSVMQMEY RDCVINLLDT PGHQDFSEDT YRVLTAVDAA LMVIDAANGV EPQTRRLLQV CRARNTPILT FVNKMDREVQ DPMSVMDEIE RELGMAVVPF TWPVGMGKLF HGVYDRREDR MRVFSPGEEK AGGDDEILAG LDNAEAAKRF GAEYKQAQEE IELVAGASHE FDRAQFLSGK QTPMFFGSAI NNFGVQEVLD ALVDLAPAPA EREAIQRVVQ PDEKKFSGVV FKIQANMDPA HRDRIAFLRV ASGEFTRGMR LKVVRSGKEL RPNTVVSFMS QRRELLDTAF AGDIIGIPNH GVLQLGDTLT EGEALQFTGL PFFAPEMFRS VEVADPLRSK QLRAGLTQLG EEGAIQVFRP IAGSVLLLGA VGQLQFEVVA HRLEHEYGVK ARIMGSNFNL ARWVTSDDAN ELKKFMDANA HRVALDAVDA PTLLVDHSAT LRAVEQQWPK IRFHALREHA GLVFQSKM
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