| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3076 |
|---|
| Symbol | |
|---|
| ID | 4014271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 3243512 |
|---|
| End bp | 3244717 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637942743 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_549888 |
|---|
| Protein GI | 91788936 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.297998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTG AATTGGCCCG CCTGATCCTG GCGCAGATCT GCCTGCATGC CTGCATGGCC
GGCACACGCA TGACGGCACC GCTGCTGGCG CTGCGTGAGG GCTATAGTCC TGCGGCGGTC
GGCGTGCTGC TGGCACTTTT TGCCGTCACC CAGGTATTCC TCGCCCTGCC CGCAGGGCGC
TTTGCCGACC GCCATGGCCT CAGGCGGCCC ATGGGCTTCA GTGTGATGGC TGCGGTGGCC
GGTGCCAGCG CCGCAGTGGC TTTTCCGGTG TTCCCGGTGC TGTGCCTGGC CGCATTGCTG
ACCGGCGGCG CTACGGGGGC TGCGGTAATT TCGCTGCAGC GCCACGTGGG GCGGGCGGCA
TCCGGGCCCT TGCAGCTCAG GCAGGTCTTC AGCTGGCTGT CGATTGGCCC TGCGGTTTCC
AATTTCATTG GGCCTTTCAC GGCCGGCCTG CTGATTGACC ACGCGGGCGC CGTGCCCGGC
AGCCTGGAGG GCTATCGGGC AGCTTTTTTC CTGATGGCGG TGTTGCCTAT TGCCAGCTGG
TTTCTGGTTC GGCGCACCCG TGAACTGCCG CCGGTGATTG CCGCAACGGG CGGTGTGCAA
CCCAAGGCCT GGGATCTGCT GCGCGAGCCC ACGTTTCGCC GGCTCATGCT GGTGAACTGG
TTTTTGTCGT CCTGCTGGGA TGTACACACC TTTGTCGTGC CGGTGCTGGG CTTTGAAAGA
GGCATCAGCG CTTCGGTCAT CGGCTCCATC CTCGGTGCCT TTGCCATCGC CGCGGCCGTC
ATTCGCATGG TGATGCCGCT GCTGGCCGCT CACCTGCGGG AATGGCGGGT GCTGGCCAGC
GCCATGCTGG CCACGGCAGC GCTGTTCGCA ATTTACCCGC TGATGCGGTC GGCGCTGGGC
ATGGGTGTCT GCTCGGTGTT GCTGGGTTTT GCCCTTGGCA CGGTGCAGCC CATGATCATG
AGCATGCTGC ACCAGATCAC TCCAGAAGCC CGCCACGGCG AGGCGCTGGG GCTGCGGTTG
ATGGCGATCA ACGCCTCCAG TGTGCTGATG CCCATGCTGT TTGGTTTCGC CGGCGCCCTG
GTGGGCATTG CGGGCGTTTT CTGGGTCACT GGTGCGCTGG TGGGGGCCGG TTCGCGCACG
GCCTGGCTGC TGCAGCACAG CCTGCCACTC CATGACGGGC ACCCCGAGCA GAATCGGCCG
CAGTGA
|
|---|
| Protein sequence | MTRELARLIL AQICLHACMA GTRMTAPLLA LREGYSPAAV GVLLALFAVT QVFLALPAGR
FADRHGLRRP MGFSVMAAVA GASAAVAFPV FPVLCLAALL TGGATGAAVI SLQRHVGRAA
SGPLQLRQVF SWLSIGPAVS NFIGPFTAGL LIDHAGAVPG SLEGYRAAFF LMAVLPIASW
FLVRRTRELP PVIAATGGVQ PKAWDLLREP TFRRLMLVNW FLSSCWDVHT FVVPVLGFER
GISASVIGSI LGAFAIAAAV IRMVMPLLAA HLREWRVLAS AMLATAALFA IYPLMRSALG
MGVCSVLLGF ALGTVQPMIM SMLHQITPEA RHGEALGLRL MAINASSVLM PMLFGFAGAL
VGIAGVFWVT GALVGAGSRT AWLLQHSLPL HDGHPEQNRP Q
|
|---|
| |