| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2044 |
|---|
| Symbol | |
|---|
| ID | 4015308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2123488 |
|---|
| End bp | 2124798 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637941716 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_548872 |
|---|
| Protein GI | 91787920 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2270] Permeases of the major facilitator superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0220318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTTT TTTCCCAGGA TGCCCTCAAC CCCGGCGTAC GCAAGCGCGA GGTGTTTGGC
TGGGCCATGT ACGACTTTGC GAACTCGGGC TACACCACTG TCGTGATCAC GGCAGTGTTT
GCCGCCTATT TCGTGGGCGG CATTGCGCAG AAGGCCGAGT GGGCCACCTT TGCCTGGACG
GCGGCGCTCA GCGTGTCCTA CGCGATTGTC ATGCTCACCA TGCCCAGCAT CGGTGCCTAT
GCCGACCTGC GCGCAGCCAA GAAACGGCTG CTGATGCTGA CGACGATGGG TTGCGTGGTG
ACCACCGCAG CGCTCGCGCT CGCAGGGCCT GGCAGCGTGG CGTTCGCCAT GTTGCTGATC
ATTCTGTCGA ACACCTTTTT TTCGTATGGC GAATCACTGA CCGCCGCCTT CCTGCCGGAG
CTGGCCAGGG CCGAGGCCTT GGGCAAGGTC AGCGGCTGGG GCTGGAGTTT TGGCTATTTT
GGCGGCATGC TGGCGCTGGG GCTTTGCCTG GGCTACGTGA TTTGGGCCCA AGGCCAGGGC
ATCAGGGCCG AGCAGTTTGT TCCCGTCACC ATGCTGATCA CGGCGGTGAT CTACGGCTTG
GCATCGCTGG TCACGTTCCG CCTGCTCAAT GAACGGGCCC GGCCCAACCC GGCTGCATTG
CGTCAGGGCG GTATCAAGGC TTCGCTTGCG CAGCTGCACC AGACTTTTCG CCAGGCCAGG
CGTTACCGGG ATTTCATGTG GCTGCTGGCC TGCGCCGTGT TTTACCAGGG GGGCGTGGCC
GTGGCCATCG CGCTGGCTGC GATTTACGCC GAGCAGGTGA TTGGCTTCCA GCCGCAGGAA
ACCATGGTGC TGATCTTCGT GCTCAACCTT GCAGCCGCCG GCGGCGCGTT CGCCTTTGGT
TATTTCCAGG ATCGCATCGG CCACAAGCTG GCGCTAGGCA TCACGCTGGT GGGCTGGATC
GCCACTTGCG TGATCGCTGC CGTCACAACG ACCAAAGGCG GCTTCTGGTA CGCCGCCGCG
ATCGCGGGCC TGTGCATGGG CTCGAGCCAG TCGGCTGGCC GCGCCATGGC CGGCATGTTC
GCGCCGAAAA GGCAACTGGC GGAGTTTTAC GGCCTGTGGA CCTTCGCGAT CCGCCTGGCC
AGCATCATCG GGCCGTTAAG CTACGGCGCC ATCACCTGGA TGACGGGAGG TAACCAGCGC
ATAGCCATTC TGTCGACGGC CGTGCTGTTT GCCGTGGGAT TGGTGCTGCT GATTCCGGTG
AATGTGCAAC GCGGGCGTGA AGCCGCGCTG CAGGCTGACG CCCAGATCTG A
|
|---|
| Protein sequence | MALFSQDALN PGVRKREVFG WAMYDFANSG YTTVVITAVF AAYFVGGIAQ KAEWATFAWT
AALSVSYAIV MLTMPSIGAY ADLRAAKKRL LMLTTMGCVV TTAALALAGP GSVAFAMLLI
ILSNTFFSYG ESLTAAFLPE LARAEALGKV SGWGWSFGYF GGMLALGLCL GYVIWAQGQG
IRAEQFVPVT MLITAVIYGL ASLVTFRLLN ERARPNPAAL RQGGIKASLA QLHQTFRQAR
RYRDFMWLLA CAVFYQGGVA VAIALAAIYA EQVIGFQPQE TMVLIFVLNL AAAGGAFAFG
YFQDRIGHKL ALGITLVGWI ATCVIAAVTT TKGGFWYAAA IAGLCMGSSQ SAGRAMAGMF
APKRQLAEFY GLWTFAIRLA SIIGPLSYGA ITWMTGGNQR IAILSTAVLF AVGLVLLIPV
NVQRGREAAL QADAQI
|
|---|
| |