Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6845 |
Symbol | |
ID | 6279551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3194251 |
End bp | 3196923 |
Gene Length | 2673 bp |
Protein Length | 890 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642617872 |
Product | hypothetical protein |
Protein accession | YP_001890508 |
Protein GI | 187921476 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3064] Membrane protein involved in colicin uptake |
TIGRFAM ID | [TIGR03504] FimV C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000661999 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.206537 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTTC GACTCTCATC CCTTCGGGCT ATGTTCAATC TTCCGGGTGC GAGCCGATTG ACGGCCGCCG CCGCTGTGTC CGCCGCGCTT GTGTGCGCTG GCATGGGCAG CGCGGCCGCC GCACCGGGCG ATGCCGCGAG CGCACCGGAC GCCGCCTCCG TTTCGTACGC GAACGGTGGT CAAGTGACGG TGCGGCCTGG GCAGTCGCTG AACGACGTGG CGATTGCCGT CACGCAGTCG CACGACAAGG CGACGCTCGC ACGTGCCTCG CGCGCGTTGT TCGATGCGAA CCCGAATGCC TTCATGAGCC ACGACCCGAG CCGGTTGCGG CTGGGTGCGG TGTTGACGGT GCCGGTGCTG GATGCGTCGG GTGCGCTGGC GGCGTCGGCG GCGGGTGTCG CGGCTGCGCC TGCCTCGGCG CCTAATGCGG CATCTGCGAC TAGCGCGGCG AGTGCCGTGG CGCAGGCCAA CGCGGCGGCG GCAAGCGCAG CAAGCGCTGC GGCGCCAGCC GCCCCCGCTG TTTCTGCGAT GGCCAGTGCG GCCACTGAAG CGAGTTCGGC GACGCCGGGT AGCACGGCTT CGTCGGCGCC GATCGCGGGA TCTCAGGCGG CGGCATTGCC GGCCAGCGGT ACTCATGCGT GGTCCGGTTC GATTCAGCCG TCAGCTAGCG AGGCTGAAGG CGCATCAGCG GCTGGTGCCG GAACGACTCC GGCGACGACC GCCGCGCAGC CGGCATCGCA ACCGCGTGCG CAAGTGTCGA GCCTGCAGCA ATTGCTCGCG CTGAAAAATC GCGTGCTGAT GGAGTTGCAG AAACACGGTA TCGGCGGGAC GCCTCCCGCT ACGAACACGG CGTCGACCGG CGTCGCGCAA CCGGCGGTTG GCGTGTCATC AGCGGCGGCT GTGCCGAGTC ACGGCTCTAC GCCCGTGGCA TCGACGTCGA GTGGTGCTGG CATGTCGCAG ACGGAGTTGA GCGTGGCGGC GGCGATTGGC GCGGCGCTGG TCGCGTTGCT GGCGGCGCTG CGCATGGGCC GGCGTAAGCG CGAACGTCTG GCGGCGGAAG CTGCGTCGGC GGATGGCGGT GGGGCGGCGT CCGCGCGGGC AACGGGCCCG CAGGACGTCG TGTCGACGCG CGAGCAGATT CCGGCGCGCG GAGCGTCGGA TGTCGGCGAT GATTTGCCCG TTGGAAACGC GGCGGCATTG GCGGCTGCGG AGCGTGAAGC TGCGGAAGGC GACGCGGCGG CGCGTGAAAT GGAAGAACGG GTCGCGGCGG AGCGCGACGC GGAGATTCGT CAGGCCGCTG CGCGGGAGGC GGCGGAAAAA GCAGAAGAGC AGGCTGCGGC TGAACGTGCG GCAGCAGAGC AGGCAGCGGC CGAGCACGCG GCAGCGGAAC GTACGGCAGC AGAGCAGGCA GCGGCAGAGC ACGCGGCGGC GGAACGCACT GCAGCGGAGC AAGTAGAGGC TGAACACGCA GCAGCAGAAC GCACGGCAGC AGAGCAGGCC GAAGCCGAGC GCGCAGCAGT AGAACGCGCA ATCGGGGAAC GTGCAGCAGA AAATCAACCC GCTGCAGCCC ACACGACCTT CCCGTCACCC GGCCTCAACG CGCCCGACCA CATCTCGCAA GAGCGCGACG CCGCGCCCGC ATCCGTCGAA CCTGCGCAAT TGAGTCCGAA CGTCGCTCCG TCCGCTCAGG GCGGTTCGAT TCCGGAACCT CTCCCCGGGC CCCACCACGA CGACTTCGAC AGCGCGACCA CGGCCGCAAG TCTTGCCGCC GCTGCGGAAC TCGGCGCCGA CGCCTTGCCG CTGACGCCGC TTGAGCCCGT CGACGACGCC TTCCTGCACG AGGAACCCGC TCATCGTCTG CAATGGGACG ATACGCCGGC CGCGCGGCTC GAGCCGTCGA TCGAATCGCA GCGCCATCTG AACGTGCCGC CAGTCGATCT CCAGCAGCCG CACGTCGAGC CGCAGTCAAC TCCGGCGTTC AGTCAGTCTC ACAGCGATGC GGCTTCGCCA GCTGAGCCGT TGCAGGACGA GGCGCAGCGA GCGCATAGTG AACTGGCGCA GGAGCCGCAT CAACCGGTTC AAACGTTACC GTCCGATGCC TCGCCGACCC GCGAGCCAGA ACCGCGAGCG CAGCCCGCAC CCGCAGCCGT GCCGACCGAA TTCCCGCGCG ACGCCGTCGA TGCGTTCGGC AGCCTCGACA TGCCGTTGCC GCCGCGCGTC GAGTCGTCCG CCGATGCCTT GCAAGCGCCC GCCTCACTGT CGAGCCAGCC GGTGGCGTCG CCGGAAACCA CTGCACAACA GGCTGTGCCG TTGCCCGACC CGGACGAGAC GCCGCACGTT GCCGACGAAA TCACCGCGGG CACCGCAGGC CACGCGTCCG TCGCAGGCTT GGGCGCGGGG TTTGGCACGG GCCTGGGTGC GGCCGGCTTC GGCGCGTTGA AGCTCGATTT CGATCTCGAG TTGCCGCCGA GCCCGGCCCA GCCGTTGCCG GCGTTCACGC AGAACGATCT CAGCCGCATC GCCCGCAATA AGCTCGAACT GGCGGCCGAA TACATCGAGC TGGGCGATCT GTCCGGCGCG CGCGCGCTCA TCAACGAAGT GATCGAGACG AACGATCCGG GTACGCGCAC CGAGGCCCGC GCGTTGCTCT CGACGCTCGC CCCGTTGTCG TGA
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Protein sequence | MNLRLSSLRA MFNLPGASRL TAAAAVSAAL VCAGMGSAAA APGDAASAPD AASVSYANGG QVTVRPGQSL NDVAIAVTQS HDKATLARAS RALFDANPNA FMSHDPSRLR LGAVLTVPVL DASGALAASA AGVAAAPASA PNAASATSAA SAVAQANAAA ASAASAAAPA APAVSAMASA ATEASSATPG STASSAPIAG SQAAALPASG THAWSGSIQP SASEAEGASA AGAGTTPATT AAQPASQPRA QVSSLQQLLA LKNRVLMELQ KHGIGGTPPA TNTASTGVAQ PAVGVSSAAA VPSHGSTPVA STSSGAGMSQ TELSVAAAIG AALVALLAAL RMGRRKRERL AAEAASADGG GAASARATGP QDVVSTREQI PARGASDVGD DLPVGNAAAL AAAEREAAEG DAAAREMEER VAAERDAEIR QAAAREAAEK AEEQAAAERA AAEQAAAEHA AAERTAAEQA AAEHAAAERT AAEQVEAEHA AAERTAAEQA EAERAAVERA IGERAAENQP AAAHTTFPSP GLNAPDHISQ ERDAAPASVE PAQLSPNVAP SAQGGSIPEP LPGPHHDDFD SATTAASLAA AAELGADALP LTPLEPVDDA FLHEEPAHRL QWDDTPAARL EPSIESQRHL NVPPVDLQQP HVEPQSTPAF SQSHSDAASP AEPLQDEAQR AHSELAQEPH QPVQTLPSDA SPTREPEPRA QPAPAAVPTE FPRDAVDAFG SLDMPLPPRV ESSADALQAP ASLSSQPVAS PETTAQQAVP LPDPDETPHV ADEITAGTAG HASVAGLGAG FGTGLGAAGF GALKLDFDLE LPPSPAQPLP AFTQNDLSRI ARNKLELAAE YIELGDLSGA RALINEVIET NDPGTRTEAR ALLSTLAPLS
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