Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6038 |
Symbol | |
ID | 6280345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 2268863 |
End bp | 2271754 |
Gene Length | 2892 bp |
Protein Length | 963 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642617098 |
Product | YadA domain protein |
Protein accession | YP_001889741 |
Protein GI | 187920709 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.408762 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGCAAGT CTTATAAGAT CGAATGGCGT AGCACGACGC GTACATGCGC GGCGGCGTCC GAGATGGCGA AAAACCGTGG TGGGCGAGGG GTGGCGGGAT ATGGCGCGCT GGTAGCCGCC GGTACCAGTC TGTTTGGGAC GTTGGTGATG GCTTTGCCTG CGAGGGCGGC CGGCGAGTCG CCCAACCCGA TCATGAATGC GCCTGTCGAA TGGGATGCCG CCGATCTGGC GACTGTCAGT CAAACGCCCG ACTCCAACCT GAGCCGTCCA AAAACGCTAA CGCTTGCAAC TGTTGCGTTG ACCGATCCCG TACCCGTCAC CCAGTTCATT GCCGTCAGTC AGTTCACCAC ACCCGCTTTG ACGACCTCCG CGTCGGGAGG TGAAAACGCG ATGGCGGTCG GCGTCGGTGC GACGGCCATC GACACTAACG CGCTCGCAAT CGGCACGAGT TCCGGCGCTG CGCGGGTCAA TACGACCGCC GTCGGCGCAG GAGCCGCTGC GTTGGCATCC AATGCGACGG TGGTGGGCGC CGGCGCGACC AGCAACTATT TTGCAGAGAA CGGTGTTGCA ATCGGCTATA ACGCAGCCGT ACAGAACGTC AATGCGCTGG CTATCGGGAC GAACGTCCAG ACGAACGCGG CGAACTCGAT CGCGGCGGGT AGCGGCGCCT TTATCGCGGA GGCCGCCACG AAGGCAATCG CGTTTGGTTC CGGCGCGACG GCCACTGCGG CGGGCTCGGT CGCGTTGGGT GCGGACTCCT CCGCGGACCG TGCGAATACC GTCTCGGTCG GTAGCGCCAC GCTGCAACGG CAGATCGCCA ATGTCGCGGC CGGCACCCAG GGCAGCGATG CCGTCACAGT CTCGCAGTTG AAGGGCATGG CGGGCGTGCT GGGAGGCGGC ACCGACGTTG CCGCTGACGG AACGATCGCG AAGCCCGTCT ATAAGGTCGG TGGGAGGATA TACAACGATG TCGGCTCCGC GCTAGCGGCC GTCGTCACCA CCAGTACTCA GGCCAGCGCC GATTCCGTTC AGTACGATTC GACCTCACAC GACAGCGTCA CGTTAGGCAG CGCTGCCGCG CCGGTTCGGC TCACCAATGT GCGCGCCGCG AACCTCGCTG CCGGCAGTTC GGACGCCGTC AACGGCGCGC AGCTGTTCGC CACCAATCAG GCCGTCGCGC AGAACACCGG CAGCATTACG AACCTGGATC AGCGCGTCAC TGACAACACG ACGAACATCA GCAATCTCGA CCAGCGCGTC ACTGACAACA CGACGAACAT CAGCAATCTC GACCAGCGCG TCACTGACAA CACGACGAAC ATCAGCAATC TCGATCAGCG CGTCACCGAC AACACGACGA ACATCAGCAA CCTCGACCAG CGCGTCACCG ACAACACGAC AAGCATCAGC AATCTCGATC AGCGCACCAC GACGATCGAA GGCGACGTGA GCAACATCAC GAACCAGATC ACCAACGGCG AGATCGGGCT TGTTCAGCAG GATCAGACCT CGCGCAATCT CACCGTGGCG AAAGACACGG ACGGCGCCCG CGTCGATTTC ACCGGCACCG GCGGCGCCCG CGAGTTGACG GGCATTGCGG CGGGCACCAC GGACGCATCA GCGGTCAATC TCGGCCAGTT CAAACCGATG GTGGCCGCGC TGGGCGGCGG CGCGCAGATC AACGCCGATG GTTCGCTGAC CGGCCCAAGC TATCACGTGC AGGGCGGCAC GCAAACCACC GTCGGCGACG CGCTCGGCTC GCTCGACAAT GGCCTCAGTA CCTTGCAGCA GAGCATGGAG ACTGGCGGTA TCGGCATGGT CACGCAGGAC CCCGTGTCGC GCGTCATCAA TGTCGGTGCG GTGACGGACG GCAAGCTGGT CAATATGGCC GGCACCGCGG GCCATCGCGT CATCACAGGC GTGGCGGCCG GCGCGGTCAG TCCTGCCAGC AGCGACGCGG TCAACGGCTC GCAACTGTAT GCGCAGGCGG CCAGCACGGC GGTGGCACTC GGCGGCGGGG CAACCGTCAA CGCGGACGGT TCGGTCTCGG CACCGTCGTA TAGCGTGGGC GGCACGGTCG TGAACAATGT CGGCAGCGCG ATCACCAACC TGGATGGCCG TGTGACGCAG AACAGCAGCG ATATTTCCGG TCTGCAGACC ACCGTTGGCA ATCTTGGCGG CGCGGTCGCG AATGCGGTCC AGTACGACAG CTCGGCGCAT GACAGGATCA CGCTCGGCGG CGTGGCGGCC AATGCCCCGA AAGTCCAACT GACCAATCTG CAGGACGGCA CACTATCGGC CACCAGTACC GATGCAGTGA CGGGAGCGCA ACTCTGGAAC ACCAACCAGA CTGTCAGCAC GCTCAGTCAG CAGATCAACG TGGTGCGGAA CAACCAGACC ACCGGCAGTC CCTACGTTGC CGTCAACAGT TCCGGTACAG CGGCGCAGGC AATCGGCAAC GGTTCTGTGG CGATCGGCGG CGGCTCGAAA GCATCGGCGC CGAATTCGGT GGCGATCGGC GAAGGCTCGG TGGCCGATGT GACGAACACG GTTTCGGTAG GCTCGTCCGG CAGCGAGCGC CGCATCACCA ACGTCGCCGC CGGGCAGGGC CCAACCGACG CCGTCAACAT GCAGCAGTTC CAGGGGGGCT TGAGCGACAT GGCGCGCAAC GCCTATTCCG GAACGGCGTC GGCGCTGGCG CTGACGTCGA TCCCCGAAGT CGATGCCACG AAGAACCTCG CCATCGGCGT CGGAACGGCC GGTTACAAGG GGTATCAGGC GGTGGCGGTG GGGCTGTCGG CGCGCGTCAC GCAGAGTCTG AAGGTGAAGC TCGGCGCGGG CATCAGTTCC GCCACGACCG CGGTCACGGC CGGTGCGGCG TATCAGTGGT AA
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Protein sequence | MSKSYKIEWR STTRTCAAAS EMAKNRGGRG VAGYGALVAA GTSLFGTLVM ALPARAAGES PNPIMNAPVE WDAADLATVS QTPDSNLSRP KTLTLATVAL TDPVPVTQFI AVSQFTTPAL TTSASGGENA MAVGVGATAI DTNALAIGTS SGAARVNTTA VGAGAAALAS NATVVGAGAT SNYFAENGVA IGYNAAVQNV NALAIGTNVQ TNAANSIAAG SGAFIAEAAT KAIAFGSGAT ATAAGSVALG ADSSADRANT VSVGSATLQR QIANVAAGTQ GSDAVTVSQL KGMAGVLGGG TDVAADGTIA KPVYKVGGRI YNDVGSALAA VVTTSTQASA DSVQYDSTSH DSVTLGSAAA PVRLTNVRAA NLAAGSSDAV NGAQLFATNQ AVAQNTGSIT NLDQRVTDNT TNISNLDQRV TDNTTNISNL DQRVTDNTTN ISNLDQRVTD NTTNISNLDQ RVTDNTTSIS NLDQRTTTIE GDVSNITNQI TNGEIGLVQQ DQTSRNLTVA KDTDGARVDF TGTGGARELT GIAAGTTDAS AVNLGQFKPM VAALGGGAQI NADGSLTGPS YHVQGGTQTT VGDALGSLDN GLSTLQQSME TGGIGMVTQD PVSRVINVGA VTDGKLVNMA GTAGHRVITG VAAGAVSPAS SDAVNGSQLY AQAASTAVAL GGGATVNADG SVSAPSYSVG GTVVNNVGSA ITNLDGRVTQ NSSDISGLQT TVGNLGGAVA NAVQYDSSAH DRITLGGVAA NAPKVQLTNL QDGTLSATST DAVTGAQLWN TNQTVSTLSQ QINVVRNNQT TGSPYVAVNS SGTAAQAIGN GSVAIGGGSK ASAPNSVAIG EGSVADVTNT VSVGSSGSER RITNVAAGQG PTDAVNMQQF QGGLSDMARN AYSGTASALA LTSIPEVDAT KNLAIGVGTA GYKGYQAVAV GLSARVTQSL KVKLGAGISS ATTAVTAGAA YQW
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