Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5950 |
Symbol | |
ID | 6279623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 2170736 |
End bp | 2172550 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642617012 |
Product | diguanylate cyclase |
Protein accession | YP_001889655 |
Protein GI | 187920623 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.407449 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACGGC CAGGGCTGAC CTTCAAACTA TCCGTGCTAC TTGCGTGCAT CGGCGTGCTG GCGTCCGGCG CGACCGGCTA TTACGCGTAT CGCGCCAACC GCACGATGCT CGTGAACGAA GCCGAGCGCA GTCTGCTCAT GTCGACGGAA CTGCTCGGCC AGCGCTTTTC CACCTCGATC GACGATGTCG GCGCCGACGC GCTCGTGCTC GCGAGCATGC CGTCCACGGC GGAGGTCGCG CAGACCGACG ACGGCGCCGG CCCGAACGCG GCACGCGAAC GGCTGGCGCA GGTGTATTCC AGTTTCATGG TGCATCACCC GGAGTACCTG CAAGTGCGGC TGATTTCGCG TCAGCACTAT GGACTCGAAC TGGTTCGCTT CGACCGCGAC GCCGACGGCC TCGTGCGCGT CGAAGGGGAC AAGCTGCAGG AGAAAGGCCA GTTCGCGTAC GTGTTCGACA CGTTGACGTT TTCGCCCGGC CGCATCTACA CCTCCCCGAT CACGGTCAAC CACGAATACG GCTCGCATGC CGCGCAAGGC AAGCCGACCT TGCGGCTCGG CACGCCGGTG TCGAACGGCA ACGGCGCGGT GGTGGGCGTG ATCGTGATCG ACATCGATCT GGCGGGTTTG TTCAGGCGCG TGCAAAGCGA TTTGCCGAGC GACTATGAGG TCTATCTGGC CAACGAGTGG GGCGATTTCC TCGTCAATCC GGATGCGTCG AAAACCTTCG GCTTCGATCG CGGCAGGCGC GTGCTGATGC AGGACAGTTT CTCCGTCACC AAGCCGCTTT TCGAACAGAC GCAAAGCGAG GTGCTGGTCA ACGGCCTGGC GCGGCCGCAC CAGGCCGCCG GCCAGGTACT CGCTTTCGTG CGCCGGCCGT TCGGCGATCT GGAAGGCAAC CGCTTCATCG TGCTCGGTCT CGCCAAACCG CTCGACGACG TGTTGTCCGG CGCGAATCTG CTGGGCGACC GAATCGTGCG CATGGTGCTG ATTTTCAGCG TGCTGGCGCT GTTCCTCGCG GTTCTGTTCG CGCGCGCGCT GACCAAGCCG CTGCATAGTC TCGCGTATGC GGCGACGCAT CTGTTCGCCG AGCACGCCAT GGAGACGCTG CCGCTCAAAC GCACCGACGA AATCGGCGTG CTGGCGCGCT GCTTCGACCG GCTGCGCCGT GAAATCAAAG CGCAGATGGA CGCGCTGCAC GCCAAACAAC GCGAGCTCGT GCATCTCGCC ACGCACGACG TGCTGACCGG ACTGCCGAAC CGCGTACTGT TCATGGAGAA GCTCGAAAAT TCGATCGACG AAGCGACGCG GCGCGAGGAA GGCCTGGCCG TACTGTTCGT CGACCTGGAT CGCTTCAAGC AGATCAACGA TCAGTTCGGC CATGCCGTCG GCGACAAGGT GCTGGTCGCG GTGGCGCGCC GCCTGAAACA GGTGCTCTGT TCCGCCGATG TGGTGGCGCG TCTGGGCGGC GACGAATTCA TCGTGTTGAT CGAGGGGCCG CGCTCCGCGG AGGCAGCGCC CGCGATTGCC TCGCGCATCA TGGCGGCGTT GAACGAGGAA CTCCAGGTGG ACGGACAAGG CATGACGGTG GGCGCGAGCA TCGGCATCAG CCAGTTCCCG GACGACAGCG GCACCGCCGA GGAACTGCTG CTCAACGCGG ATGCCGCAAT GTATGCGGCC AAATCCGGCG GACGCTGCGC CTATATGCGA TACCACGATG TGCTCGACAT GCGCCGCCGC GAACAGTTCG AGCAGGCGCA TGCAGCGGCG GGCATCGGCG CGACAGAAGG ACACGAGGCC GAGCCGACGG CGTGA
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Protein sequence | MIRPGLTFKL SVLLACIGVL ASGATGYYAY RANRTMLVNE AERSLLMSTE LLGQRFSTSI DDVGADALVL ASMPSTAEVA QTDDGAGPNA ARERLAQVYS SFMVHHPEYL QVRLISRQHY GLELVRFDRD ADGLVRVEGD KLQEKGQFAY VFDTLTFSPG RIYTSPITVN HEYGSHAAQG KPTLRLGTPV SNGNGAVVGV IVIDIDLAGL FRRVQSDLPS DYEVYLANEW GDFLVNPDAS KTFGFDRGRR VLMQDSFSVT KPLFEQTQSE VLVNGLARPH QAAGQVLAFV RRPFGDLEGN RFIVLGLAKP LDDVLSGANL LGDRIVRMVL IFSVLALFLA VLFARALTKP LHSLAYAATH LFAEHAMETL PLKRTDEIGV LARCFDRLRR EIKAQMDALH AKQRELVHLA THDVLTGLPN RVLFMEKLEN SIDEATRREE GLAVLFVDLD RFKQINDQFG HAVGDKVLVA VARRLKQVLC SADVVARLGG DEFIVLIEGP RSAEAAPAIA SRIMAALNEE LQVDGQGMTV GASIGISQFP DDSGTAEELL LNADAAMYAA KSGGRCAYMR YHDVLDMRRR EQFEQAHAAA GIGATEGHEA EPTA
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