Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5792 |
Symbol | |
ID | 6279816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1996636 |
End bp | 1997472 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642616857 |
Product | Shikimate dehydrogenase substrate binding domain protein |
Protein accession | YP_001889500 |
Protein GI | 187920468 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATCCAC ATATCACAGG AACAACGCGA CTTTATGGGT TGGTGGGCGA TCCACTGACG GCCGCCAAGT CGCCGCAGCT GTTGAACCAG CTTTTTACTG AACAGCGCGT GGACGCAGTT TGCGTTCCGT TCTGGGTCAA CGCCGCAAAT CTGCCGGCCT TCGTCAGCGG TGCGCGAGCG ATGGGCAATC TGTCCGGCAT GCTGGTCACC ATGCCTCATA AACAACGGAT GCTCGCGCTT GTCGACGAAC TTGATCCGAC TGCCCGTCAG GTCGGGGCGC TCAACGTCAT TCGCTGCGAA CCGGATGGAC GCTGGATTGG CGCGATATTC GACGGCGTTG GCTGCGTTCT TGGGATGCAG TGGGAAGGCA ACCATCCGGC GAATAAGTCC GTGCTTCTCG TTGGCGCCGG AGGCGCCGGT AGCGCCATCG CATTTGCCGT CGCGGCTGCT GGCGCTAGCA ACCTAACCAT ATCTGATGTC GATGAGGCCC GGGCTGGCGG CCTTGCGGCA TCCGTCGCTG CCGAAACAGG ATGCGACGCT CGTTCGGGGC CACCCGACCC GCAAGGATTC GAGATCGTGA TCAATGCCAC GCCGCTCGGC ATGAAAGCAA ACGATGCCAT GCCGGTCGAT CCGGAGCGGC TGGCGCACGG CGCCATTGTC GTCGACATCA TCAATGCGGC CGAGCCGACG CCGCTTCGCC GAGCCGCGCA AGCGCGCGGT TGCCGCACCC AGGACGGCGG CCCGATGCAT CGGGGGCAGG CCGTCTATGC CCTCAGGTTT CTGGGCTTCG ATTACCGCCC CGATGGACGA TCAACACCCG ACGACGGCCC GCGATAA
|
Protein sequence | MDPHITGTTR LYGLVGDPLT AAKSPQLLNQ LFTEQRVDAV CVPFWVNAAN LPAFVSGARA MGNLSGMLVT MPHKQRMLAL VDELDPTARQ VGALNVIRCE PDGRWIGAIF DGVGCVLGMQ WEGNHPANKS VLLVGAGGAG SAIAFAVAAA GASNLTISDV DEARAGGLAA SVAAETGCDA RSGPPDPQGF EIVINATPLG MKANDAMPVD PERLAHGAIV VDIINAAEPT PLRRAAQARG CRTQDGGPMH RGQAVYALRF LGFDYRPDGR STPDDGPR
|
| |