Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4970 |
Symbol | |
ID | 6278651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1107903 |
End bp | 1108985 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642616056 |
Product | sodium/calcium exchanger membrane region |
Protein accession | YP_001888704 |
Protein GI | 187919673 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0387] Ca2+/H+ antiporter |
TIGRFAM ID | [TIGR00378] calcium/proton exchanger (cax) [TIGR00846] calcium/proton exchanger |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.14573 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCACGC CCGCGATCGT TCTGCCCCGC TGGACCATTG CCGCGCCGTT CCTTGCGTGG ATCGTGCTCG GCATCGGGTA TGCCATGCCG GACAGCGGGC TGCTGCTCGT GCTGGTCGGC GTCGCGCTGT GCGCGGCGGT CTTCACCGCC GTGCATCATG CGGAAGTGGT CGCGCATCGC GTCGGTGAGC CGTTCGGCAC GTTGGTGCTG GCGGTGGCCG TCACCGTGAT CGAGGTCGCG CTGATCGTCT CGGTCATGCT CACGTCCGGT CCGGAAAAAG CCGCCCTCGC GCGCGACACG GTTTTCGCCG CGGTCATGAT CGTTTGCAAC GGCATTGTCG GCATTTGCCT GCTGGTCGGC GGCATTCGCC ACCGCGAGCA GGATTTCCAG AGTCGCGGCG CTGCTGCGGC GCTGGCGGTG CTCGCGTCGC TCTCCGTGCT GACGCTGGTC ATGCCGAACT ACACGACCAC CAGCGTCGGT CCGATCCTGT CGTCTTCGCA ACTGGCGTTT GCGGGGGTGT CGTCGCTGGT GCTGTATGGC GTGTTCGTAT TCGTGCAAAC CGTTCGCCAT CGCGATTACT TCCTGGCCGG CACGCCGGAT GAGGACGTCC ACGCCGCGCC ACCGAGCGCC GGCCAGGCGC TGGCGGCCGG CGGTTTGCTG CTGGTGTGCC TCGTCGCGGT GGTGTTGCTT GCGAAGGTGC TCTCGCCGGT GGTCGAAACG GCGGTCGAGA ATGCGGGCGC GCCGCCGGCG GTGGTCGGCA TTATCATTGC CGCGCTCGTG CTGTTGCCTG AAGGGCTTGC CGCGGTGCGC GCGGCGCGCG CCGACCGCTT GCAGAATAGC CTGAATCTCG CGCTCGGCTC GGCGCTGGCC AGTATCGGGC TGACCATTCC GACGGTCGCC TGCGTGTTTT TGTATACCGG CCAGCCGCTG GTGTTGGGCA TCGACGGCAA GGAAACCGTG CTGCTCGTGC TTACGCTGAT CGTCGGCACG CTCACGCTCA GCAGCGGGCG CACGACGATT CTTCAAGGCG CCGTGCATCT GTCGCTGTTC GCGGCGTATC TGTTTCTGTC GTTCGCGCCC TGA
|
Protein sequence | MTTPAIVLPR WTIAAPFLAW IVLGIGYAMP DSGLLLVLVG VALCAAVFTA VHHAEVVAHR VGEPFGTLVL AVAVTVIEVA LIVSVMLTSG PEKAALARDT VFAAVMIVCN GIVGICLLVG GIRHREQDFQ SRGAAAALAV LASLSVLTLV MPNYTTTSVG PILSSSQLAF AGVSSLVLYG VFVFVQTVRH RDYFLAGTPD EDVHAAPPSA GQALAAGGLL LVCLVAVVLL AKVLSPVVET AVENAGAPPA VVGIIIAALV LLPEGLAAVR AARADRLQNS LNLALGSALA SIGLTIPTVA CVFLYTGQPL VLGIDGKETV LLVLTLIVGT LTLSSGRTTI LQGAVHLSLF AAYLFLSFAP
|
| |