Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4878 |
Symbol | |
ID | 6278029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1001721 |
End bp | 1002629 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642615965 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001888613 |
Protein GI | 187919582 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00176242 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.778008 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAACT TTACCGATAA AGTCGCCGCA ATCACCGGCG CAGGCTCGGG CATGGGCCGC TCGCTCGCGA TTCAGTTGGC GCGCGAAGGC TGCCACCTCG CGCTCGCCGA CCGCAATGCC GTGAGCCTCG CCGAAACCGC ACAGCTTGCG CAAGCCGCGG CGCCGCAGAT CGTCGGCTCG CCGTTACACA TCACCACACG CGTGCTCGAT GTTGCAGACC GCGCCGCGAT GTTCGACTGG GCCGCCGAAA CCGCCGCGCA GCATCAGAGC GTCAATCTCG TGTTCAACAA CGCGGGCGTC GCGCTATCGA GCACCATCGA AGGGATGGAT TACGCGGATC TGGAGTGGAT CGTCGGCATC AACTTCTGGG GCGTGGTGCA CGGCACGAAA GCGTTTCTGC CGTACATCAA GGCCTCCGGC GACGGCCATA TCGTCAACAC GTCGAGCGTG TTCGGGTTGT TTTCGCAGCC GGGCATGAGC GGGTACAACG CGACCAAATT CGCCGTGCGC GGCTTTACCG AAGCGCTGCG CCAGGAACTC GACCTGATGA AGTGCGGCGT CTCGGCGACC TGCGTGCATC CGGGCGGCAT CCGCACGAGC ATCGCGCAAT CGAGCCGTAT CGCGACGAAC ATGGTCGGTT TCATGCTGGA AACCGAACAG CAAGGCAAGG ACGACTTCGA GAAGTTTTTC ATCACCACCG CCGACGAAGC CGCGCGCGTC ATTCTCGACG GCGTGCGCAG GAACAAGCGG CGCGTACTGA TCGGACGCGA CGCGCGGGCC GCCGACTGGC TGGCGCGCAC ACTGCCGGCC GCCTATCAGG CACTGGTGGT GATGCAAACG CGCCGCATGA AACGCGTCGC CGAAAAACGC GCGCGGCGCG CCGCGCAGAT AGACGGCAAG CGCGCCTGA
|
Protein sequence | MKNFTDKVAA ITGAGSGMGR SLAIQLAREG CHLALADRNA VSLAETAQLA QAAAPQIVGS PLHITTRVLD VADRAAMFDW AAETAAQHQS VNLVFNNAGV ALSSTIEGMD YADLEWIVGI NFWGVVHGTK AFLPYIKASG DGHIVNTSSV FGLFSQPGMS GYNATKFAVR GFTEALRQEL DLMKCGVSAT CVHPGGIRTS IAQSSRIATN MVGFMLETEQ QGKDDFEKFF ITTADEAARV ILDGVRRNKR RVLIGRDARA ADWLARTLPA AYQALVVMQT RRMKRVAEKR ARRAAQIDGK RA
|
| |