| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4822 |
|---|
| Symbol | |
|---|
| ID | 6279760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 936014 |
|---|
| End bp | 936787 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642615909 |
|---|
| Product | transcriptional regulator, GntR family |
|---|
| Protein accession | YP_001888557 |
|---|
| Protein GI | 187919526 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00147753 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0149979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CAATAGATGG TTTTCCCCTG GACGCCCCGG CGCGCACCCC GCTGTTACCC
GCGGCGGCGC CGCGTGAGAG CACGTCCCGC GTGATCGCGG AGGCGCTGCG TGCGGCGATT
GTCGACGGCA CGCTGGCGCC CGGCGCGCCG CTGCGGCAGG ACGCGATCGC GCGGCATTTT
TCAGTCAGCG CAATTCCCGT GCGCGAAGCG CTGCGTCAGT TGGAGAGCGA AGGCTGGGCC
AAAGCCGCCG TGCATAAGGG CGCAACCGTC GCGCCTTTGT CGGCGGAAGA AGCGCGCGAA
ATTTACGAGA TCCGCTCCGC GCTGGAGAGT CTCGCCATCG GGCTCGCGAT TCCCAGGCAC
ACGGCGGCCA CGTTGCGCGA ATCCGCCAGC CTGTGCCGCG CAGCCGAACG CGAGGCGAAC
CCATCGCTTT ACGTCGCGCG CAATGTGGCG TTTCACATGA GCCTGTACGC GCCCGCTGCC
CGTCCGCAAC TCGAGGAGAT GATCGGCACG CTGCATCGGC GGGGTGAACG GTATCTGCGT
CTGAAGTTCG GCTTGCCGTC GTACAAGGGC GCGTCCGACA ATGAACACGC CGCGCTGCTC
GACGCCGTGG AATGCCGCGA CATTTCCGCC GCCCAGCAAC TGGTCGTCGC GCATCTGCTG
GGCACGGGCG ACCTGCTTTA TCGTTTCCTA ACCGAACGCG CGCAGGCCGA AGCCGCGCTT
GCGAATCAAC CCAAGCCGCG CGGCAGACGC CCGCGCGCCA CCACCGGGAG CTGA
|
|---|
| Protein sequence | MSDAIDGFPL DAPARTPLLP AAAPRESTSR VIAEALRAAI VDGTLAPGAP LRQDAIARHF
SVSAIPVREA LRQLESEGWA KAAVHKGATV APLSAEEARE IYEIRSALES LAIGLAIPRH
TAATLRESAS LCRAAEREAN PSLYVARNVA FHMSLYAPAA RPQLEEMIGT LHRRGERYLR
LKFGLPSYKG ASDNEHAALL DAVECRDISA AQQLVVAHLL GTGDLLYRFL TERAQAEAAL
ANQPKPRGRR PRATTGS
|
|---|
| |