Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4265 |
Symbol | |
ID | 6279043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 312409 |
End bp | 313455 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642615360 |
Product | porin Gram-negative type |
Protein accession | YP_001888013 |
Protein GI | 187918982 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.505475 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCAACC AAGCAACGTC AATGGCCATT GGATTGTGTG CTTCCATCGT TCTGGCATGT ACGTCGCAAG CGACGATGGC GCAGAGTAGC GTGACTCTTT ACGGAATTTT GGATGTGAGC GTTCAGCTTA CAACGCGCGC GGACGGACAG CATTCCGCAA TTAATCTTCA AAACTATGGG AGCGTACCTA CGATCTTTGG GTTACATGGG TCAGAGGATT TGGGCGGGGG GGTATCTGCA ATATTTGAGC TCTCTCAATC ATTTAGTATG ACTAATGGAA AATCAGGAAT CCCGGGTGAT GCATTTGGGT GGCAGAGCTA TGTCGGCCTC AAAGGGGGCT TTGGAACTGT GACGGCTGGA CGACAGTTTT CTGTTCTCTT TGACGAGACA GTAATGTTTG ATCCGACCTA CTTCGCCGCA TATGGTGGGC AGGCACAGCT CAATCCGCTA TCGGACATTA TTGTGAACAA CTCGATAAAG TATCTATCGA ACAGCTATGG CGGCTTCGTC TTCGAGGGGT TGATATCGAC CGATGGTGTT GCAGGAAATT TCGCATCTGG GCGTACCCTG GAACTTGGAA TGCAATACAG CCGCGGCCCG TTTAATATGA GTGTGGCTCT GCGGGAGAAA AATGGTTCAG AGATGGAAAC CGCAGGCAGC TCGGGGAAGA CTGAGAGGAT CGGTGTGATT GGCGCTGCGT ATAAGATCGG CCCCGCAACG CTACTCGCGG GTGTCGAGCG CACGACCGGA GATTTGTCAC CTGTCAAAAC GGTTATTTGG GGCGGGGGTC GCTACGATGT CACACCGGCT CTCCAATTCC GGGCTGCCGT CTATCAGACG CTTTCAAAAA ATCCGCAGAC TGGCGATCCA ACGTTATATG TCGCAGGGGC TGTCTATTCG CTATCCGTTC GTACACAAAC TTACCTGAAT GTTGGGTACT CCAGGAACTC TGCTCATAGT TCTCAGACGG TTTATGAATA TGGTGATGCT CCACTTAATG GAGCGAATCA GTTCGCGGTG ATGTTGGGGA TTACACATAA ATTCTGA
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Protein sequence | MCNQATSMAI GLCASIVLAC TSQATMAQSS VTLYGILDVS VQLTTRADGQ HSAINLQNYG SVPTIFGLHG SEDLGGGVSA IFELSQSFSM TNGKSGIPGD AFGWQSYVGL KGGFGTVTAG RQFSVLFDET VMFDPTYFAA YGGQAQLNPL SDIIVNNSIK YLSNSYGGFV FEGLISTDGV AGNFASGRTL ELGMQYSRGP FNMSVALREK NGSEMETAGS SGKTERIGVI GAAYKIGPAT LLAGVERTTG DLSPVKTVIW GGGRYDVTPA LQFRAAVYQT LSKNPQTGDP TLYVAGAVYS LSVRTQTYLN VGYSRNSAHS SQTVYEYGDA PLNGANQFAV MLGITHKF
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