Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4031 |
Symbol | |
ID | 6280192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 45686 |
End bp | 47119 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642615134 |
Product | Tetratricopeptide TPR_2 repeat protein |
Protein accession | YP_001887787 |
Protein GI | 187918756 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.636683 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAGTG TGCAGAGCCA ACGTCGGCCA GTGAATTGGC AAAGCCGGCC TTTTTGCGCG GATGCCCGTT CAAAGCGTCG TATGGCAAAG CGCGACTTCC CGGCGGGATT CGTGCCGTTC GGGTTGCAGA CCGCCGGCTT CATCGTACGA GGCCCGAAAC AATTGTGGCC GTATGTTTTG CCGTGGGTGT TCGCGGTGCT CACCATAGGT TTTTTCTGCC TCGTCGTGCG CGGCGTACTC ACGCGGCAAT TGCTGGTGCC GCCCGTCGAA ACGCCGCAGT CGCTGGTGGA ACGCGGTTAT ACATCGAATT TTCTCGCGGA ACGCATCATG TCTTCTATGC GAGCGATCGG TCAGGACGCC GAGTCGATTC CGCACGACAC CCTGACGGAC AACGACGCAC AACCGGACAT TCAGATCCCC GGTCAGGAGA TGTCGTATGC AACCACCGTG CGCTTCATTA AAGGCGTCAT CAAACGCACG GACGTGGCCG TTCATGTCGG CATCACGAAG GTTAACGACA GCGCGGACTC CTATGTGGCG CATGTGCAGA TTGAAGGCGG TCCGTTTAAT TCCCGCGAAA GCACGGTGTC GTTCGAAGGA CGCGATCTGG AAAAGTTCGT GCACGACATT GCAGTCAAAG CCATGCGTCT TGCGGAGCCG AATATTCTCG CCAGTCATCT CTACTCGCAA GTGCAGAAAA CCAAGTGTTC CCTCGCGCAC TGCGACTACG GCGAGATCGT CGCGATCTAC GACGAAGTGC TCGCACTGCC CGCCTCTGAG CAAGGCGAAT GGGCGCTCGC CGGCAAAGCG TGGCTGCTTG CCAATCAGGG GCTGTCCAAA GAGGCCGAGC AGCAGACTCG CGAAGCGTTG ACCGTGTACC AGCATTCAGC GGTGCTGCAC GCAAGCCTTG GCATTGCACT CGAACAGCAG CATCGCATCG ACGACGCACT CGATGCCTTG CGAGCCGGCG CACGCGAGAA ATCGAAGACG GCGGAAAATC TGCGTCTTCT CGGCGACGTG CTATTGCATG CGAATCGCTA TTCCGAAGCG CTCGATGCAT TCAAGCAGGC CGACAAGATG AAGCCCGACT CGGTCGACAA CCTGCACGAT TGGGGCGAAG CGCTCGTCAC CGTCGGCCGC TATGACGAAG CAATCGAAAA GCTCTCGCGC GCCGTCGCGC TACGCCCGGA TCTCGCGCCC TCTTACGCGG AATGGGGCCG GGCACTGGAT CGCAAAGGCG ATCGGTCCGG CGCCTCGCGC AAATTCGCTC AGGCGTTGCA ACTCGATGCG GGGACTTTGT CGGTGCGCGA GAGTCATCTG GCGCGGCTTG CCAGAGCGGC GCAGGGAGGC AACCGCCCAG ACGCGTCGAA GCCCGATGAC GGAGTCAGGC CCGTTTCGAA TCCACCCGCC CCGCTTGCGT TGCAAACCGC GTAA
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Protein sequence | MSSVQSQRRP VNWQSRPFCA DARSKRRMAK RDFPAGFVPF GLQTAGFIVR GPKQLWPYVL PWVFAVLTIG FFCLVVRGVL TRQLLVPPVE TPQSLVERGY TSNFLAERIM SSMRAIGQDA ESIPHDTLTD NDAQPDIQIP GQEMSYATTV RFIKGVIKRT DVAVHVGITK VNDSADSYVA HVQIEGGPFN SRESTVSFEG RDLEKFVHDI AVKAMRLAEP NILASHLYSQ VQKTKCSLAH CDYGEIVAIY DEVLALPASE QGEWALAGKA WLLANQGLSK EAEQQTREAL TVYQHSAVLH ASLGIALEQQ HRIDDALDAL RAGAREKSKT AENLRLLGDV LLHANRYSEA LDAFKQADKM KPDSVDNLHD WGEALVTVGR YDEAIEKLSR AVALRPDLAP SYAEWGRALD RKGDRSGASR KFAQALQLDA GTLSVRESHL ARLARAAQGG NRPDASKPDD GVRPVSNPPA PLALQTA
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