| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2018 |
|---|
| Symbol | |
|---|
| ID | 6284638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2280847 |
|---|
| End bp | 2281530 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642621583 |
|---|
| Product | NAD(P)H dehydrogenase (quinone) |
|---|
| Protein accession | YP_001895649 |
|---|
| Protein GI | 187924007 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1182] Acyl carrier protein phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.042412 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TGCACGTCGA CGCCAGCGCG AAACGCGAGC GATCAAACTC CCGCGCATTG
AGCCGCTATT TTCTGGAACG CCTGCGCGAA GAAGGCGCGC AGTTCGAAGT CGATTATCTG
GATGTCGCGA TCGACACTCC GCCTCATGTC GACGAGGCGT TTGCCATCGC CACGTACACG
GCCGCGCAGG ATCGCACGCC TGCCATGAAG GCGACGCTGG CCGGTTCGGA TGCGTTGTGC
CAACGCCTGC TCGACGCCGA TGCATTCGTC TTCGCCATGC CCATGTACAA CTGGTCGATG
CCTTCGGCAT TCAAGGCGTT TATCGACAGC ATCACGCGTA CGGGCCTGAC CTATGTGAAT
GCGGACGACG GCCGCGTGGT CGGTCAGCTT TCACGTCAGA AGGTGCTCTT CATTACGAGC
CGCGGCGCGG ATTTGCGCGC GGGTTCGCCT TATGAAGCCA TGGATGCGCT TACGCCATCG
CTGAAGGCCG CGTTCGGCTT TCTCGGCGTG GCCGATCCGA CCTTTGTCGA TGCCCAGCCG
CTGCAATTTG CCAATCCTGA AGCGCGCATT GAAGCGCTTC AGCGCGCGCG TGCCGAACTG
GACGCGGTGG CGTCGAGCTG GGCGTCGACC CCAACGGATT CGAGCGATGA AACCTTTAAC
GCTTTGTCTG GAGTTACAGC ATGA
|
|---|
| Protein sequence | MKIMHVDASA KRERSNSRAL SRYFLERLRE EGAQFEVDYL DVAIDTPPHV DEAFAIATYT
AAQDRTPAMK ATLAGSDALC QRLLDADAFV FAMPMYNWSM PSAFKAFIDS ITRTGLTYVN
ADDGRVVGQL SRQKVLFITS RGADLRAGSP YEAMDALTPS LKAAFGFLGV ADPTFVDAQP
LQFANPEARI EALQRARAEL DAVASSWAST PTDSSDETFN ALSGVTA
|
|---|
| |