| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2017 |
|---|
| Symbol | |
|---|
| ID | 6284637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2280419 |
|---|
| End bp | 2280850 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642621582 |
|---|
| Product | Cupin 2 conserved barrel domain protein |
|---|
| Protein accession | YP_001895648 |
|---|
| Protein GI | 187924006 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0367587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCC GCACATTGAT CGCGGCGGCC ACGTTCGCCA GCTTTTCCCT TCTCTTGACC
GCGCACTCCG CATTCGCCGC TGACGCAAGC GCGCCGCACG AAACGATCAC GCCCGCGTTC
GCCGAGGCGA TCGCCAACGT GCCGGGCAAA ACGATGACGG CGCTCGTCGT CGAGTATGCG
CCCGGCGGCA AGTCGACGCC GCATCGGCAC GGCCAGGCTT TCGTGGTCGG CTACGTGTTG
TCGGGGGCGA TCCGCAGCCG CGTGAATAGC GGCGAAGAAC GCGTCTACCA TGCCGGCGAA
CACTGGACCG AGAAGCCCGG CGTGCATCAC ACCGTGAGCG AAAACGCGAG CGATACCGAA
CCCGCCAGAT TGCTGGCGAT TTTCGTGGCT GATACGAAAG ACAAGAACCT GGTGACGTTC
GACAAGAAGT GA
|
|---|
| Protein sequence | MKIRTLIAAA TFASFSLLLT AHSAFAADAS APHETITPAF AEAIANVPGK TMTALVVEYA
PGGKSTPHRH GQAFVVGYVL SGAIRSRVNS GEERVYHAGE HWTEKPGVHH TVSENASDTE
PARLLAIFVA DTKDKNLVTF DKK
|
|---|
| |