Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1631 |
Symbol | nusA |
ID | 6283218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 1838235 |
End bp | 1839710 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642621192 |
Product | transcription elongation factor NusA |
Protein accession | YP_001895265 |
Protein GI | 187923623 |
COG category | [K] Transcription |
COG ID | [COG0195] Transcription elongation factor |
TIGRFAM ID | [TIGR01953] transcription termination factor NusA [TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.00268035 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTCGCG AAGTGTTGAT GCTGGTGGAT GCGCTGGCAC GCGAGAAGAA CGTCGACAAA GACGTGGTAT TTGCCGCGCT CGAGGCGGCC CTCGCTTCGG CCTCCAAGAA ACTCTTCGAA GAAGACGCGG ATATTCGCGT CCAGATCGAT CGTGAAAGCG GCGAACACGA AACGTTTCGA CGCTGGAAAG TGGTGCCGGA CGAAGCCGGT TTGCAGGAGC CGGATCAGGA AATCCTGCTG TTCGAAGCAC GCGAACAGAA GCCCGAGATT CAGCTCGACG AGTTCATCGA GGAACCGGTG CCGTCGATCG AATTCGGCCG TATCGGCGCG CAGGCCGCCA AGCAGGTGAT CCTGCAGAAG GTGCGCGACG CTGAACGCGA ACAGATTCTG AACGACTTCC TCGAGCGCGG CGAGCACATC ATGACCGGCT CGGTTAAGCG TCTCGACAAG GGCAATTTCA TTGTCGAAAC CGGCCGTGTC GAGGCGCTGC TGCGCCGCGA TCAGCTGATT CCGAAGGAAA ACCTGCGCGT GGGCGACCGC GTGCGTGCCT ACATCGCAAA GGTCGATCGC ACCGCGCGCG GTCCGCAGAT CGAACTGTCG CGTACGGCTC CCGAATTCCT GATGAAGCTG TTCGAGATGG AAGTGCCGGA AATCGAACAG GGCCTGCTGG AAATCAAGGC GGCCGCGCGC GACCCGGGCG TGCGCGCGAA GATCGGCGTG GTTGCATACG ACAAGCGCAT CGATCCGATC GGCACGTGCG TCGGTATTCG CGGTTCGCGC GTGCAGGCGG TGCGTAACGA GCTCGGTGGC GAAAACGTCG ACATCGTGCT ATGGTCGGAG GATCCCGCAC AGTTTGTGAT CGGCGCGCTC GCGCCGGCAG CCGTCCAGTC GATCGTCGTC GATGAAGAAA AACATTCGAT GGACGTCGTC GTAGACGAAA ACGAACTGGC GGTCGCGATC GGCCGCAGCG GCCAGAACGT GCGTCTTGCC AGCGAACTCA CCGGCTGGCA GATCAACATC ATGACGCCGG ACGAATCTGC GCAAAAGCAG AATCAGGAGC GCGGCGTATT GCGTGACCTG TTCATGGCGC GTCTCGATGT CGACGAAGAA GTCGCCGACA TCCTGATCGA CGAAGGCTTT ACGAGCCTCG AAGAGATCGC TTATGTGCCG CTCAACGAAA TGCTCGAAAT CGAAGCATTC GACGAAGACA CCGTTCACGA ACTGCGTAAC CGCTCGCGCG ACGCGCTGTT GACGCAGGCA ATCGCGAATG AAGAAAAGGT CGAAAATGTA GCACTCGACC TGAAGAGCCT GGACGGCATG GACGCCGACC TGCTCGCCAA GCTGGCCGAA CATCAGATCC AGACGCGCGA CGAACTCGCC GAGCTGGCTG TGGATGAACT GGTCGAGATG ACCGGAATGG AAGAGGATGC CGCTAAGGCG TTGATCATGA AAGCACGTGA ACACTGGTTC CAGTGA
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Protein sequence | MSREVLMLVD ALAREKNVDK DVVFAALEAA LASASKKLFE EDADIRVQID RESGEHETFR RWKVVPDEAG LQEPDQEILL FEAREQKPEI QLDEFIEEPV PSIEFGRIGA QAAKQVILQK VRDAEREQIL NDFLERGEHI MTGSVKRLDK GNFIVETGRV EALLRRDQLI PKENLRVGDR VRAYIAKVDR TARGPQIELS RTAPEFLMKL FEMEVPEIEQ GLLEIKAAAR DPGVRAKIGV VAYDKRIDPI GTCVGIRGSR VQAVRNELGG ENVDIVLWSE DPAQFVIGAL APAAVQSIVV DEEKHSMDVV VDENELAVAI GRSGQNVRLA SELTGWQINI MTPDESAQKQ NQERGVLRDL FMARLDVDEE VADILIDEGF TSLEEIAYVP LNEMLEIEAF DEDTVHELRN RSRDALLTQA IANEEKVENV ALDLKSLDGM DADLLAKLAE HQIQTRDELA ELAVDELVEM TGMEEDAAKA LIMKAREHWF Q
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