Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_0934 |
Symbol | |
ID | 6284528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 1048323 |
End bp | 1052312 |
Gene Length | 3990 bp |
Protein Length | 1329 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642620494 |
Product | type VI secretion protein IcmF |
Protein accession | YP_001894577 |
Protein GI | 187922935 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGT TGTCGTTTCT GGTATCGCGC TGGTTCCTCG CGTTCCTCGC GCTGTTGGTC CTCGGACTGT TGATCTGGTT TCTGGGGCCG TTCGTCGCGT TCGGCGGCCT CAAGCCTCTT GTTAGCGTCG GCATGCGCGT CCTCGTGATC GCGCTGCTGC TCGTGGGCGC GCTGCTCTGG CTCAAGGGCT GGTCGACCGG CGTGGTGTTC GGTGCGCTGC TGTGCCTGCT GGTCTGGTAC GCAGGGCCGC TGTTGAGCTT CGGGCGTGCC GCGCCGTTGA CCTCCGTCGC GGCGCGCGTG ATCGCCATTG GCGTCGTGCT GGCGCTTTTT GCCGCATTCG GTCTGTACTG GCTCTGGCAG AAAATGCGCA GCGACGAAGC GTTCCTCAAA AAAGCGCTGA CGTTCGGCGG CAAGAAGGAG ACGCCGCCGG CCGCCGGCAG GCTCAAAGAG GTCGAGGCTC GCATCAACGC CGCGCTCGCG CGGCTGAAGT CCATGCGCAC GGGCGCGCGA GGCGTGGGGC GGCTCTTCCA GGGCACGCGG TATCTGTACG AGCTGCCCTG GTTCATCGCG CTCGGCTCGA CCTCCTCCGG CAAGACGAGT GCATTGCTGA ACGCCGGGCT GGCGTTTCCG ATTGGCGGCG CGACGCCGCG AACGGCCGGC GCATCCGTCG GCACGAAGAA CATCGACTGG TGGCTGTCGA ACGATGCCGT TCTGATCGAT ACCGCGGGCT ACTACACGCG ACATGGCGCA TCGACTCAGT CATTGCCCGC GCTCGCGGAC AAACGCGCCG AAAACAAAGA CGACAACAAA GACGACAACG CCGGCTGCGG CACGGCCGCA ACTCAGGGCA CGGATGCCGC AGTGGGCGAT GCCGACTGGC GTCGGCGTGT GGACGAAGAC GAATGGCATG GCTTTCTCGA CCTGCTTCGC CGTCACCGCC CGCGCGCGCC GATCAACGGC GCGGTGCTCG CAATCAGCCT CGACATACTG ACGGCCTCCG ACCCCGCGGT GCGCGCGACC GAAGCCGACA TGCTGCGCGA ACGGCTGGCC GATTTGCGCA CCAGGCTGGG TATCCGCTTT CCGGTGTACC TGATGATCAC GCAAATGGAC CGTTTGTCCG GGTTCGCCGA TTATTTCGGA TCGCTGACCG AGGAACATCG CGCGCAGATG TGGGGATTCA CGCTCCCGGT CAACGGCCAA TCGGCCCGGA GCGATCTCGC TGCGGTGTGC AACGGAGAAC TGAGGCAGCT TGTCACGCGT CTCGCCGGCG GCGTGAACAC GCGGCTGGAA GACGAGTACG ACATCGAGCG CCGCCGGCGC CTCGCGGCAC TGCCGGAAGC GTTCGCCGCG CTCTGCGCTC CGCTTGCCGA GTTACTGGGG CAACTGTTCG TCGATTCACG TTACGACGCT ACGCAAAATC ACACGATGCT ACGAGGCGTC TATTTCACGA GCGCATTGCA GGCCGGGCAA ACAGTCACTG CCGAACCGCT CACGGTCGTG CAGCGTCTGA TGGCGGGGCG CAGTCGCCTG TTCTCGGCGG ACGCGGCGCG GCCCGCCGCG AACCACAGCT ATTTTTTGCA CGATCTGTTC ACGAAGGTTG TCTTTCCCGA AGCGCATCTG GTGCGGCCCA ATCTGCGCTG GGAGTACCGT TTCCGCCTGT TGCGGCTGCT CGGGCACACG CTCGGCCTCG TATTGTTCGT GTGGCTCGCA ATGGGCATGC GCGTGAGCTT CGGCAATAAC AGCGACTATC TGGATGCGAT CGCGCGCAAG AGCCAGGCAC TCGCGGCCAA GGTTACGCAG CTTTACCGCG AGCCCAAACC GGAAGCCGTG CCGGACACGT TGGGCGAGGC GCGCTATCTG CCGACCTGGA CAGGACTGGA TCTGTCGGAT CCCGACAGCC GCTTTCGCTA TGGCCTCTAC AGCGCGCCGG GTGTCGTCGA GGCGAGCCGC GACACCTATC GCGCGCTCGA GGACAATCTG CTGCTGCCGT CCATCGTTCA CCGCCTCGAA GACGTCATTG CTGAGTCGAT GGCGAACAAG GATGCCAAAG CGACCTACGG CGCGTTGCGC GTCTACTTGA TGCTGTATGA CAAGGCGAGG TTCAACTCGA CCGATATCAA AGCCTGGGTA CTCGACGACT GGGCAAAAAA CGACAGCGCG TCGATCTTCG GCGGACGGGC TTCGATGATC GAACACGTCG AGCAGTTATT TTCCGGCGAG CGTATCGTTC AGTCGCCGCT GATCCGCAAC GACGGCCTGA TTCAGCAGGC CCGCGCATTT CTCGACGGCA GCAATGCCAC GCAGCGGCTC TACGAGCGCG CGAAGGCGGA CATGCAGAAG GAGGCGCCCG ACGAGTTCAC GCTGCTTCGC GCGGTCGGAC CGCAGGCCGG CACGGTGTTC ACGCGTGTCA GCGGCGCACC GCTCTCGCGC GGTGTGCCGG GCCTCTTTAC GTTCGACGGC TACCAGAACC TGTTCGACAA GCGGCTGCCG GAGTTCGTCC AGGCAGCGCG CGACGACGAC GCCTGGGTCA TGGGACGTTC GTATCTTGGC GAGGCTCAAA AAAAAACGGC TGAAATCGTA AGCACGGTAA CGGGCGCCGA CGATCCGCTG ACGGAAGCCA TCCGCCGGCT CTATCTGACC GAATACGCGC AGCAATGGGA CGCTTTCCTC GGCGATATCC GCACGGTCGC CGGTACCAGC CTTGCCTTCA ATCTGCAGGT GCTGCGCCAG TTCGCTGCAC CCGATTCGCC GCTGGCGCGC CTCGCTCGCG CAGCCGTGCA TGAAACGACG CTCACCCAGT CGATCGCCGC CGCCAATGGT TCTCTGCTGC AGAAAACGAC CGACCAGTTC AGTCAGAAAG CGGATAAGGC GCTGGGCATC CGCGCGGAAG AGCGCGTCGA GCGCGAACTG GTGGACGGCC ATTTCGCCGC GCTGCGCGAG ATGGTCACAG GCAGCGCCGA CACCTCGGCC GCCGAGGCGC CGGCCAATGC TCAAGCCGGC AAGACAGGTC TCGACGGCGT AACGAGCCTG CTCAACGATT ACTACACCAC ACTGACGGTC GCGGATAACG CGATCGCGAA CAACAGCATG CCGCCCGCCA GCGATGCCGC GGCAAAACTG AAAATGGCGG CCAACACCAT GCTGGCGCCC TTTCGCGACG TGTTGCTCGG CCTCTCGGTG CAGGGTTCGC GCGAAGTCAA TCAGGGCATC GGGCAACTGC TTTCGCGGCA GATGCAGGCC GTGGTCAGCG ATACGTGCCG AATGACCGTG GAGGGCAACT ATCCTTTTGC GCCGGACAGT CCGCGCGACG TGAGTGTCGA CGACTTCACA CGCGTATTCG CACAGGGCGG CGTGATCGAC GACTTCTTCA CGAAGAACCT CGCACCGTTC GTCGATACCT CGGCGAAGCC GTGGCGCTAC AGAACGCTGC CGGGCGCCAC CGATCCCGTA CGGGGCCCCG ACCTCGAACC ATTCCAGCAC GCGAGGCAAA TCCGCGACGT GTTCTTCGGC GACCAGGGCA AGCAACTTCT TTGGAAAACT GACATCCGCG TGCCCGAACT CGATCCGACC GTGACGACGC TGGCAATCGA CATCGACGGT CAGACCATGC TGTATCAGCA CGGACCCGTC GCACCATTCG CGGTGAGCTG GCCTGGGCCG CGCGGCGGCG TGCATGCCGA AATGACCGCG AGCCCACGCA TTCGCAATGA AACCTCGACG CTCGTGACGG ACGGCCCGTG GGCACTCATG CGTTTGCTGC GCAAGGGGCA GATTGTCCAG ACGGCCACGC CGGGGCGCAC CCGCGCGGAG TTCGATTTCG ACGGACGCAA GGCGGTGCTC GATATCACCG GTGCGGGCAG CGTCGCCAAC CCGCTGACCA GCGAAGTGCT CACGACCTTC CGTTGCCCGA ATTCGATGTC GATGTTCAGC CTGCCTGACA GCGGGCCGCC GCCCGGCTTG CCGGCGGCGG ATGCCGACCG CGCTCATTGA
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Protein sequence | MKKLSFLVSR WFLAFLALLV LGLLIWFLGP FVAFGGLKPL VSVGMRVLVI ALLLVGALLW LKGWSTGVVF GALLCLLVWY AGPLLSFGRA APLTSVAARV IAIGVVLALF AAFGLYWLWQ KMRSDEAFLK KALTFGGKKE TPPAAGRLKE VEARINAALA RLKSMRTGAR GVGRLFQGTR YLYELPWFIA LGSTSSGKTS ALLNAGLAFP IGGATPRTAG ASVGTKNIDW WLSNDAVLID TAGYYTRHGA STQSLPALAD KRAENKDDNK DDNAGCGTAA TQGTDAAVGD ADWRRRVDED EWHGFLDLLR RHRPRAPING AVLAISLDIL TASDPAVRAT EADMLRERLA DLRTRLGIRF PVYLMITQMD RLSGFADYFG SLTEEHRAQM WGFTLPVNGQ SARSDLAAVC NGELRQLVTR LAGGVNTRLE DEYDIERRRR LAALPEAFAA LCAPLAELLG QLFVDSRYDA TQNHTMLRGV YFTSALQAGQ TVTAEPLTVV QRLMAGRSRL FSADAARPAA NHSYFLHDLF TKVVFPEAHL VRPNLRWEYR FRLLRLLGHT LGLVLFVWLA MGMRVSFGNN SDYLDAIARK SQALAAKVTQ LYREPKPEAV PDTLGEARYL PTWTGLDLSD PDSRFRYGLY SAPGVVEASR DTYRALEDNL LLPSIVHRLE DVIAESMANK DAKATYGALR VYLMLYDKAR FNSTDIKAWV LDDWAKNDSA SIFGGRASMI EHVEQLFSGE RIVQSPLIRN DGLIQQARAF LDGSNATQRL YERAKADMQK EAPDEFTLLR AVGPQAGTVF TRVSGAPLSR GVPGLFTFDG YQNLFDKRLP EFVQAARDDD AWVMGRSYLG EAQKKTAEIV STVTGADDPL TEAIRRLYLT EYAQQWDAFL GDIRTVAGTS LAFNLQVLRQ FAAPDSPLAR LARAAVHETT LTQSIAAANG SLLQKTTDQF SQKADKALGI RAEERVEREL VDGHFAALRE MVTGSADTSA AEAPANAQAG KTGLDGVTSL LNDYYTTLTV ADNAIANNSM PPASDAAAKL KMAANTMLAP FRDVLLGLSV QGSREVNQGI GQLLSRQMQA VVSDTCRMTV EGNYPFAPDS PRDVSVDDFT RVFAQGGVID DFFTKNLAPF VDTSAKPWRY RTLPGATDPV RGPDLEPFQH ARQIRDVFFG DQGKQLLWKT DIRVPELDPT VTTLAIDIDG QTMLYQHGPV APFAVSWPGP RGGVHAEMTA SPRIRNETST LVTDGPWALM RLLRKGQIVQ TATPGRTRAE FDFDGRKAVL DITGAGSVAN PLTSEVLTTF RCPNSMSMFS LPDSGPPPGL PAADADRAH
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