Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_0419 |
Symbol | |
ID | 6284705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 463326 |
End bp | 465038 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642619983 |
Product | Polypeptide-transport-associated domain protein ShlB-type |
Protein accession | YP_001894068 |
Protein GI | 187922426 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.390658 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCACA GCAAAACCGC ACTCGCCGCC GCCTCTTTCG CGCTGTACAG CCTGCCGTCG CTTGCCCAGG GCGACGCGTC GCTGATCAAT GTTTTACCGG GCAGTGACAC GCTGCGCGCG CAACAGCAGC GCCTCGAAGC GACTGCGACC AACGGCACGC TCGGCAACGT GCTGCGCGAG GACGCGTCGC GTGAGGAAAC CGCCGATCTC GCGCATTTGC CCGTGCAGTC GCCATGCTTC GAGATCAGCA AAGTCCGGAT TACGAACAAT CCGTTTCGCG CCATCGATCG TCTGGTCGAA GCGGTCGAGG GCCAGTGCGT CGGCGCCGAC GGCCTGAAGT TCGTCCAGGA CAGCGTCGCC AACAAGCTCA TCGACTACGG CTACGTCACC ACGCGCGTCA CAGTGCCCGA GCAGTCGCTG ACGTCGGGCA CTCTGCAGCT CGATGTCGTG CCTGGCCGCA TCGGCGCCAT TCGCAGTGAA GGCGATACGA TCGGCGATGT CGCTCGTGCT TTGCCGTCGG GCCAAGGCGC TTTGTTGAAC CAGCGCGCAA TCGATCAGGC GCTGGAAAAC ATCCGGCGAT TGCCGTCGCA GGCGGATGCG CGGTTCGACA TCGCGCCGGG GCAAGCAGAA GGCGAATCCG ACGTCGTACT GCATGCCGGC ACCGGACGCC GCTGGCACGT CATGGCCGGC TACGACAACG CGGGCCAGGA TGCCACTGGC AAGAACGAAC TGTTCGGCGC GCTCTCCATC GATTCGCCGT TCTATCAGTA CGATCAATTG CAAGTTTCCG GCCTCACGAA CGCGAACCAC GGCGCACCGG GCAAGGGCGC GAATCAGGCG AGCGCTTCGT ACAGCGTGCC GTTCGGCTAC GCGATGCTCA CCCTCGACGC ATACCGCGCA AGCTATCTGC AGACGCAGGC GCTGCCGACG GCCGTCGCGC AGTTCACTGG CGAGCAGAAA GGTGCGGGCA TCAGGCTATC TGGCGTCGTG CAGCGTGGCG CGACATCGCG CACCGAACTG CGCGCGCGCT TCTATCGCGC GTTGAATCAC AACTACGTGA ACGACACATG GATCGGCGTG CAGGATCGCG ACGTGTACGG CTACGAAGTC GGCGCATCGC ATCGACATTA TTTCGGGCGT GTGCAGGTGG ACGCGTCGCT CGGCTGGCGC GACACGCTGC CGGGCATTTC TCGCCAGCCC GGCTACGTGG TCGGCGACGA CACGTTCAAC GGGCGTGAGC AACTCGAAAC AGCGTCGCTT ACCGTACAGG CGCCCTTTCA CCTCGCCAAT CAGCCGTTCT CCTACCAATT CATCTGGAAC AGGCAGAACG CGCGCACACG GGTGACAGCG CCCGACTACT TTACGATCGG TACACGCTAC GCAGTACGCG GCTTCGACCA ACAAGCGACG CTTGCCGCCG AAGGTGGCTG GACCGTATCG AACGAACTCG ACTGGTACGC GCCGACGTCC TACGGCGTGC AAGCCTTATA CGCGGGGCTC GACGCCGGCC GCGTAAACGG GCCGACGACG CGATACCTGG CGGGTAACAC CCTGGTGGGA ATGGTGGCGG GCGTCAAAGG CAGCCTCGCG CCGAAGAACC GTCTGTCGGC CGGCGTCAAC TATGACGTCT CTGTCGGCTG GCCGCTCCAT AAGCCGAACG GTTTCCCAAG TCGTTCGCCC ACCGTGCTTG TGCAGATCAG CACTCTGATC TGA
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Protein sequence | MQHSKTALAA ASFALYSLPS LAQGDASLIN VLPGSDTLRA QQQRLEATAT NGTLGNVLRE DASREETADL AHLPVQSPCF EISKVRITNN PFRAIDRLVE AVEGQCVGAD GLKFVQDSVA NKLIDYGYVT TRVTVPEQSL TSGTLQLDVV PGRIGAIRSE GDTIGDVARA LPSGQGALLN QRAIDQALEN IRRLPSQADA RFDIAPGQAE GESDVVLHAG TGRRWHVMAG YDNAGQDATG KNELFGALSI DSPFYQYDQL QVSGLTNANH GAPGKGANQA SASYSVPFGY AMLTLDAYRA SYLQTQALPT AVAQFTGEQK GAGIRLSGVV QRGATSRTEL RARFYRALNH NYVNDTWIGV QDRDVYGYEV GASHRHYFGR VQVDASLGWR DTLPGISRQP GYVVGDDTFN GREQLETASL TVQAPFHLAN QPFSYQFIWN RQNARTRVTA PDYFTIGTRY AVRGFDQQAT LAAEGGWTVS NELDWYAPTS YGVQALYAGL DAGRVNGPTT RYLAGNTLVG MVAGVKGSLA PKNRLSAGVN YDVSVGWPLH KPNGFPSRSP TVLVQISTLI
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