| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1912 |
|---|
| Symbol | |
|---|
| ID | 6201313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 2181098 |
|---|
| End bp | 2182834 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641705901 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001833025 |
|---|
| Protein GI | 182678879 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.855004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCC CACAAGCGAA ATCCCTTATT GAAAGCGCCC TTTCCTTTTC ACGTCAGGGA
CAATGGAGCG AGGCTCTCGA TAAAGCCGAG ACAGCCGTTT CCCTTTATCG TGTTCTGGCA
GAGGAACAAT CCAGCGCATT CAACCCTGGC CTAGCCGAAG CCCTTGATAT TCTTGCCAAT
ATTCTGAGCG AAATCGGTGA AAAGGAAAAA GCTCTGGCTT TTGCGGAAGA AGCTCTGGCG
CTCCGCCGCG TCCTGGCGGA TAGTGGCTCC GACACATTCA TTGCGGACCT GGCTTTCTCT
CTCAACACTT ATGCGACATG CCTTGGTGAG CTTGGCCATT GTCGTGGGGC TCTTATTCCA
GCACGGGAAG CGGTACAGAA TTATCGTCTT CTGACAGCCA GACAGCCTCA TCGTTTCGCG
CCCGCCCTTG CCATGGCGCT GAATAATCTT GCCAATCGGC TCAGCGAGCT TGGGCAGCGG
GAAGAAGCTT TGACCTTTGC CCAAGAAGCC GCCGCTCTCT ACCGGCAATT GGCTGACGTC
CTTCCCAATC GATTCATGCC GGACCTCGCG GGATCGCTCA ATAATCTCTC CAATCGACTG
AGTGCGCTTG GACAGCGTGA GGAAGCCCTA ACGGTGATGC AGGAAAGCGT CGCTTTCTAC
AAAGACCTGT CGGCACACCA GCCTGAACTC TTTACCCCCG CCCTTGCGAC CGCACTCAAT
AATCTCGCGA ACAAACTGAA CGATCTTGGC CGGCGGGACG AGGCGTTGGA GGCTGCACAG
GAATCCGTCA CACATTTTCG GTTCCTCACC GCAGCGCGGC CACAAGCCTT CACGCCTCAA
CTTGCGATGG CCCTCAACAG TCTCTCCAAT CGGCTGCGTG ATATCGGCCA ACGCGAGGAA
GCCTTGACGC AGGCGCAAGA ATCCGTGGCC CTTCGTCGGC GCCTGACGGC TTCGCAACCG
GATGTGTATC AGCAAGACCT CGCGGTCTCG CTCAACACCT TGGCGAATAG TCTCAGTGCC
CTCAACAGAC CGGAACAGGC TTTGACAGCG ACGCAAGAAG CTGTCGCGAT CCGCCGCTCA
CTGGTCAAGA CCCGGCCTGA AGTTTTTACG CAAGATCTCG CGGCCTCACT CAACACCTTG
GCCAATAATC TCAGCGCACT CGGTTACTAT GAGGAGGCTC TTGTGGCGGC GGAAGAAGCC
GTCAGCCTTC GCCGGACCTT GGCCGCGGGT TACCCTGATG TTTTTATCCC TAATCTCGCC
GGCTCACTCA ATACTCTTGC AAACAGGCTG AGCGATCTCG AAAGGGTCGA GGAAGCCCTT
GTCGCCGCAC GCGAGGCAGC GCAGCTTTAT CGCGCCCTGG CGGCCAATCG ACCCGCCGCC
TTTACCCATC ACCTTGCTGG ATCTCTCAAT AATCTCGCAA ACAGATTGAG CCATATCGGT
CAGCATGAAT GCGCTTTGGC GCCCGCGAAA GAAGCCGTCA ACTTATATCG CGACCTGGCT
GAAAATCGGC CACAAACATT TACCGCCGAT CTCGCTTTGG CGCTCAATAC GCTCGCCAAT
ATCTTAAACA AGACAGGCCA GAAAGAAGAG GCTTTGGCGG CGGCCAATCT TTATCGCACA
TTAGCAGCCG CGCATACTAA AGTCTTTGAC CCACACCATA TTGCTTCTCT CAACACATTG
ACGGAAATGA TCGGACCCTT ACCGTCCAAT CGCGTCGAAT GGCAGGATCA CGGGTGA
|
|---|
| Protein sequence | MTGPQAKSLI ESALSFSRQG QWSEALDKAE TAVSLYRVLA EEQSSAFNPG LAEALDILAN
ILSEIGEKEK ALAFAEEALA LRRVLADSGS DTFIADLAFS LNTYATCLGE LGHCRGALIP
AREAVQNYRL LTARQPHRFA PALAMALNNL ANRLSELGQR EEALTFAQEA AALYRQLADV
LPNRFMPDLA GSLNNLSNRL SALGQREEAL TVMQESVAFY KDLSAHQPEL FTPALATALN
NLANKLNDLG RRDEALEAAQ ESVTHFRFLT AARPQAFTPQ LAMALNSLSN RLRDIGQREE
ALTQAQESVA LRRRLTASQP DVYQQDLAVS LNTLANSLSA LNRPEQALTA TQEAVAIRRS
LVKTRPEVFT QDLAASLNTL ANNLSALGYY EEALVAAEEA VSLRRTLAAG YPDVFIPNLA
GSLNTLANRL SDLERVEEAL VAAREAAQLY RALAANRPAA FTHHLAGSLN NLANRLSHIG
QHECALAPAK EAVNLYRDLA ENRPQTFTAD LALALNTLAN ILNKTGQKEE ALAAANLYRT
LAAAHTKVFD PHHIASLNTL TEMIGPLPSN RVEWQDHG
|
|---|
| |