| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6073 |
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| Symbol | |
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| ID | 6125048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010512 |
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| Strand | + |
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| Start bp | 52224 |
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| End bp | 55007 |
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| Gene Length | 2784 bp |
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| Protein Length | 927 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641647092 |
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| Product | DNA ligase D |
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| Protein accession | YP_001773689 |
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| Protein GI | 170734575 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0510863 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCA AGCTCGATCC GTATCGCCGC AAGCGCCATT TCGGCGCGAC GCCCGAGCCC
GAAGGGGCGC ACGGCAAGCG TCGCACGAAG ACGGATACGC AAGCGGCCTC GAAGCCGCAG
GCGAAGCGGC CCGCCGCGCG CGCACGCCAT CCGCTGCGCT TCGTGATCCA GGAGCACCAC
GCGCGCCGGC TGCACTACGA CTTGCGGCTC GAACTCGACG GCACGCTGAA ATCGTGGGCC
GTGCCGAAAG GCCCGAGCTT CGATCCGCAG GTGAAGCGGC TCGCGGTGCA CGTCGAGGAC
CATCCGCTCG AATATGCGTC GTTCGAAGGC GAGATTCCGG CCGGGCATTA CGGTGCGGGC
TCGGTCGTCG TGTGGGACGA AGGCACGTGG ACGCCCGACG GCGGCGTCGC GCAGGCGCGC
GAAGGCTACC GGGCCGGCAA GCTGACGTTC CGGCTCGACG GCGAGAAGCT GCACGGCGGC
TGGGCGCTGG TGCGCAGCGG GCGGCAGGAA AGGCGTCAGG AGCAGTGGCT GCTGATCAAG
GAGCGCGACG ACGACGCGCG CAGCGCCGAT GAATTCGACG TCGTCGGCGA GCGGCCGGGG
AGCGTGCATG ACGGCGCGAC CCACGGCGCG ACACGCAAGC GCGCGGCGCG GCGCGGCCGA
TCGACCGACG CGGACGGCGA TGCACATGAC GCGCAACACC CAAGCCACGC AAGCCAGCGC
CCCACCGATC CGTCGCAGGT CGAAGGCGCG GTGCGCGCGC CGCTGCCCGA GCGCGTCGCG
CCGCAACTCG CGACGCTGGT CGATGCACCG CCGACGCAAG GTGGCTGGTG CTACGAACTG
AAGTTCGACG GTTACCGCAT CCTGGCGCGC ATCGCAGGCA AGGGCGCACG CCGGCGCGTC
ACGCTGATGA CGCGCGAAGG CCGGGACTGG ACCATGAAGC TGCGCGCGCA GCGCGACGCG
CTCGCGGCGC TCGATCTCGA CGACGCATGG CTCGACGGCG AGGCCGTCGT GCTCGGCGAA
AACGGCCTGC CCGATTTCCA GGCGCTGCAG AACGCGTTCG GTACGGACCG CTCGGACGCG
ATCACCTTCT TCGTGTTCGA TCTGCCTTAT CTCGACGGCT ACGACCTGCG CGACGCGCCG
CTCACCGAGC GTCGCGCGCT GCTCGAACCG CTGCTCGCGA ACAGCGACCC GGCGCGCGTG
CGCTTTTCGC CCGATCTCGG CGAGGACGTC GCGTCGCTGA TCGCGAGCGC GTGCGACACC
GGCCTCGAAG GGCTGATCGG CAAGCGCGCG GACTCGCGCT ATCGCGCCGG GCGGTCGTCC
GCGTGGATCA AGCTCAAATG CCGGCGCCGG CAGGAGTTCG TGATCGGCGG CTTTACGGAG
CCGTCGGGCA GCCGGCACGG CTTCGGCGCG CTGCTGCTCG GCGTGCACGA GCCGGCGCCG
GCCGGCAAGC GGCGGCGCGG GCCCGGGCCG CTGCGCTACG TCGGCCGCGT CGGCACCGGC
TTCGATGCGC GCATGCTCGA CCGTCTCGCC GCGATCCTGA GCAAACACGA GCGCGACACG
ATGCCGTTCG ATGCGCCGCC GCGCGAACGC ACGCGCACCC GCGTGCACTG GGTCGAGCCG
ACGCTCGTCG CCGAATGCGA ATTCGCGGAA TGGACCGGCG ACGGGATCGT GCGGCAGGCC
GCGTTCATCG CGCTGCGCGA GGACAAGCCG GCGGCGCAGA TCGTCCGCGA GATGCCCAAA
CATACGGAAA CGGAGGTGAC GATGGATCAA CGCCCGACCC CGCACGACGA CACACGCAAG
CGCGCATCGC GTGCCGCTCG TGAAACCGGC GATCGCAAGC CGTCTGCACG GTCTCGCGCA
GCCGCCCGCG CCGACGGCGA TGCGTCCGGC CCCGACACGC TCGGCCGCGT GCGCATCACG
CATCCCGAGC GCGTGCTCGA CCCGCAAAGC GGCACGCGCA AGCTCGATCT CGCGCGGTAC
TGGCAATGGG TCGCGCCGTG GCTGCTGCCC GACCTGAAAG GCCGTCCCGT GTCACTCGTG
CGCGCCCCCG GCGACATCGC CGGCGAACTG TTCTTCCAGA AGCACGCGGA GCGTCGCGAG
ATCCCGTTCG TCACGCAGCA CGAAGGGCTC GACCCGGGCC ATGGGCCGCT GCTGTCGATC
GACAGCGTCG ACGCGCTGCT CGGCGCCGCG CAGATGGGCA CGGTCGAGCT GCACACGTGG
AACGCGCATG CGTCGAACAT CGAGCGGCCC GACCGCATCG TATTCGACCT CGATCCCGAC
CCGGCGCTGC CGTGGCGCAC GATGATCGAC GCCGCGCAGC TCGTGCGCGG GCTGCTCGAC
GAGCTCGGGC TCGTGTCGTT CTGCAAGACG AGCGGCGGCA AGGGGCTGCA CGTCGTCGTG
CCGCTCACGC GGCATGCGGG CTGGGACGAC GTGAAGGACT TTTCGCGCGC GGTCGCGCAG
CACGTCGCCG GCACGCTGCC CGACCGCTTC ACCGCGACGA TGGGACCGCG CCACCGGCGC
GGCAAGATCT TCGTCGACTA CCTGCGCAAC GGGCGCGGCG CGAGCACGAT CGCTGCGTAT
TCGGTGCGCG CGCGGCCCGG CATGGGCGTG TCGGTGCCGC TCGACTGGGA CGAGGTGCCC
GCGACGACGG GCGGCGCGCA ATGGACGATC GACACGCTGC ACGAACGGCT GGACACGCTG
AAGCGCGACC CGTGGGAAGG CTATGCGAAG ACGCGCCAGC GCATCACCGC GGCGATGCGG
GCACGGCTCG GCGCCGACGC GTGA
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| Protein sequence | MAGKLDPYRR KRHFGATPEP EGAHGKRRTK TDTQAASKPQ AKRPAARARH PLRFVIQEHH
ARRLHYDLRL ELDGTLKSWA VPKGPSFDPQ VKRLAVHVED HPLEYASFEG EIPAGHYGAG
SVVVWDEGTW TPDGGVAQAR EGYRAGKLTF RLDGEKLHGG WALVRSGRQE RRQEQWLLIK
ERDDDARSAD EFDVVGERPG SVHDGATHGA TRKRAARRGR STDADGDAHD AQHPSHASQR
PTDPSQVEGA VRAPLPERVA PQLATLVDAP PTQGGWCYEL KFDGYRILAR IAGKGARRRV
TLMTREGRDW TMKLRAQRDA LAALDLDDAW LDGEAVVLGE NGLPDFQALQ NAFGTDRSDA
ITFFVFDLPY LDGYDLRDAP LTERRALLEP LLANSDPARV RFSPDLGEDV ASLIASACDT
GLEGLIGKRA DSRYRAGRSS AWIKLKCRRR QEFVIGGFTE PSGSRHGFGA LLLGVHEPAP
AGKRRRGPGP LRYVGRVGTG FDARMLDRLA AILSKHERDT MPFDAPPRER TRTRVHWVEP
TLVAECEFAE WTGDGIVRQA AFIALREDKP AAQIVREMPK HTETEVTMDQ RPTPHDDTRK
RASRAARETG DRKPSARSRA AARADGDASG PDTLGRVRIT HPERVLDPQS GTRKLDLARY
WQWVAPWLLP DLKGRPVSLV RAPGDIAGEL FFQKHAERRE IPFVTQHEGL DPGHGPLLSI
DSVDALLGAA QMGTVELHTW NAHASNIERP DRIVFDLDPD PALPWRTMID AAQLVRGLLD
ELGLVSFCKT SGGKGLHVVV PLTRHAGWDD VKDFSRAVAQ HVAGTLPDRF TATMGPRHRR
GKIFVDYLRN GRGASTIAAY SVRARPGMGV SVPLDWDEVP ATTGGAQWTI DTLHERLDTL
KRDPWEGYAK TRQRITAAMR ARLGADA
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