Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_5912 |
Symbol | |
ID | 6128716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 3107547 |
End bp | 3109181 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641652996 |
Product | type II secretion system protein E |
Protein accession | YP_001779523 |
Protein GI | 170738263 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.444946 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00648046 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCTCAC TTCGATTGGG GCGCCCGGGC GCCGCGGCGC CGCAGCGGGG CGCCGCCGGC GCCGATACCG CCCATCCGTT GTCCGGCGAA GGCCCGTGGG CCGCGAGCGC GGAAGAGCGC AAGCTGCTGT GCCTGCTCGA CGACGGCCGC CTGCTGATCG CCGAGGGCCA CGAACTGAGC CCGTACGTGC TGTCCTATCG CGCGCGGCTC GACCGGCTTC GCCATCATTA CCGGATGCAG GCGGTCGGGC TCGACGAGGT GCGGCGCGCG TACGAGGGGA TGCGCTCCGA CGGCACCGGC GAACGCGTCG ATCACACGGC GATGCAGGTC CTCGCGAAGG AACTGATCGC GCACGCGTGC CGCGAACGTG CGTCCGACAT TCACATCCGC GTGAAGCGCT TCAGCACGGA GATTCTGTTT CGCATTCACA ACGAGCTGGT GCGTGTGAGC GAGCAGACCC GCGAGCAGGG CGCGCGCCTG CTCGCGACGC TCTATGCGGC GATGGCGAGC GTCTCGGACA ACACGTACAA GCCGCACGAA CGCCAGGACG CGGCGATCGG CGACCGCGAC AAACTGCCTG CCGAGCTGTT CGGCGTCCGC ATTGCAACGG CCCCCACCAG CATCGGCAAC GTGATGGTGC TGCGACTGCT CTACAACGAT GCGGGCGATT CGATCGACCT GCGCCTGCTC GGATTCTCCG ATGCGCAGGC CGCGGAGATC GACGAATTGC GGCGCCTGCC GCACGGCATG AACATCATCA GCGGGCCGAC GGGCTCGGGC AAGTCGACCA CGCTGCAGCG CGTGCTGGCC GGGCAGATCG CCGAGACCCA CGGGTCCGTC CACGTCATTA CCGTGGAGGA TCCGGTCGAA TATCCGATCG CGGGCGCGGT GCAGACGCCG GTCGTCAACG CGCCGACCGA GGAAGCACGC TCGCTGGCGT TCGCCGGCGC CATCGCCAAT GCGATGCGGC TCGACCCGGA CACGATCATG ATCGGCGAGG TGCGCGACCG CGCTTCCGCG CAAAGCGCAT TGCGCGCATC GATGACCGGC CATCAGGTCT GGACCACCGT TCATGCCAAC GGCGCGCTCG CGATCATCGA CCGGCTCGTC GATCTCGGCC TGCCGCTCGC GATGGTGACC GACGAATCGC TGATCACGGG GCTCGTCAGC CAGCGCCTCG TCAAGCTGCT GTGCCCGCAT TGCAAGCAGC GGCTCGCGGG TTCGCCGCAG CAGGACGACG CGTTGGCGGC GCGCGTGCGC CGCGCGGTCG GCGCATCGTT CGACAAGGTC TTCGTGCAGG GGCCCGGCTG CGAACATTGC GGCGGGCGCG GCACCATCGG CCGTACGGTC GTCGCCGAGG TGATCCGGCC GGATGCGCGG CTGTTCGCCT ATCTGCGCGA GGGCGACAAA CATGCGGCAC GCGCATATTG GCTCGACGAG CTCGGCGGGC GCACGACCGT CGAGCACACG ATCGAGAAAG TCGCCGCGGG GCTGGTCGAT CCGCGCGCGG CCGAACGCAT CGTCGGCCCG CTCGTGGCGC GCAACGAACC GGTGCGGCTG CGTCCGGTCG ACACGACGGA AGGCCGGCGC GGTCACCCGG GTGGCGCGGT CGCGGGAGCG GGCCATGAAT CTTGA
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Protein sequence | MSSLRLGRPG AAAPQRGAAG ADTAHPLSGE GPWAASAEER KLLCLLDDGR LLIAEGHELS PYVLSYRARL DRLRHHYRMQ AVGLDEVRRA YEGMRSDGTG ERVDHTAMQV LAKELIAHAC RERASDIHIR VKRFSTEILF RIHNELVRVS EQTREQGARL LATLYAAMAS VSDNTYKPHE RQDAAIGDRD KLPAELFGVR IATAPTSIGN VMVLRLLYND AGDSIDLRLL GFSDAQAAEI DELRRLPHGM NIISGPTGSG KSTTLQRVLA GQIAETHGSV HVITVEDPVE YPIAGAVQTP VVNAPTEEAR SLAFAGAIAN AMRLDPDTIM IGEVRDRASA QSALRASMTG HQVWTTVHAN GALAIIDRLV DLGLPLAMVT DESLITGLVS QRLVKLLCPH CKQRLAGSPQ QDDALAARVR RAVGASFDKV FVQGPGCEHC GGRGTIGRTV VAEVIRPDAR LFAYLREGDK HAARAYWLDE LGGRTTVEHT IEKVAAGLVD PRAAERIVGP LVARNEPVRL RPVDTTEGRR GHPGGAVAGA GHES
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